2GTQ

Crystal structure of aminopeptidase N from human pathogen Neisseria meningitidis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.164 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of aminopeptidase N from human pathogen Neisseria meningitidis.

Nocek, B.Mulligan, R.Bargassa, M.Collart, F.Joachimiak, A.

(2007) Proteins 70: 273-279


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
aminopeptidase N
A
867Neisseria meningitidis serogroup B (strain MC58)Mutation(s): 0 
Gene Names: pepN
EC: 3.4.11.2
Find proteins for Q9JYV4 (Neisseria meningitidis serogroup B (strain MC58))
Go to UniProtKB:  Q9JYV4
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.164 
  • Space Group: H 3
Unit Cell:
Length (Å)Angle (°)
a = 224.208α = 90.00
b = 224.208β = 90.00
c = 57.679γ = 120.00
Software Package:
Software NamePurpose
ARP/wARPmodel building
HKL-2000data scaling
REFMACrefinement
CCP4phasing
SBC-Collectdata collection
SHELXEmodel building
DMphasing
Cootmodel building
SHELXDphasing
HKL-3000phasing
MLPHAREphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2006-05-30
    Type: Initial release
  • Version 1.1: 2007-12-18
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Advisory, Source and taxonomy, Version format compliance