2GRT

HUMAN GLUTATHIONE REDUCTASE A34E, R37W MUTANT, OXIDIZED GLUTATHIONE COMPLEX


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Work: 0.189 
  • R-Value Observed: 0.189 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Glutathione reductase turned into trypanothione reductase: structural analysis of an engineered change in substrate specificity.

Stoll, V.S.Simpson, S.J.Krauth-Siegel, R.L.Walsh, C.T.Pai, E.F.

(1997) Biochemistry 36: 6437-6447

  • DOI: 10.1021/bi963074p
  • Primary Citation of Related Structures:  
    4GRT, 3GRT, 1GRT, 5GRT, 2GRT

  • PubMed Abstract: 
  • Trypanosoma and Leishmania, pathogens responsible for diseases such as African sleeping sickness, Chagas' heart disease, or Oriental sore, are two of the very few genera that do not use the ubiquitous glutathione/glutathione reductase system to keep ...

    Trypanosoma and Leishmania, pathogens responsible for diseases such as African sleeping sickness, Chagas' heart disease, or Oriental sore, are two of the very few genera that do not use the ubiquitous glutathione/glutathione reductase system to keep a stable cellular redox balance. Instead, they rely on trypanothione and trypanothione reductase to protect them from oxidative stress. Trypanothione reductase (TR) and the corresponding host enzyme, human red blood cell glutathione reductase (GR), belong to the same flavoprotein family. Despite their closely related three-dimensional structures and although their natural substrates share the common structural glutathione core, the two enzymes are mutually exclusive with respect to their disulfide substrates. This makes the parasite enzyme a potential target for antitrypanosomal drug design. While a large body of structural data on GR complexes is available, information on TR-ligand interactions is very limited. When the two amino acid changes Ala34Glu and Arg37Trp are introduced into human GR, the resulting mutant enzyme (GRTR) prefers trypanothione 700-fold over its original substrate, effectively converting a GR into a TR [Bradley, M., Bücheler, U. S., & Walsh, C. T. (1991) Biochemistry 30, 6124-6127]. The crystal structure of GRTR has been determined at 2.3 A resolution and refined to a crystallographic R factor of 20.9%. We have taken advantage of the ease with which ligand complexes can be produced in GR crystals, a property that extends to the isomorphous GRTR crystals, and have produced and analyzed crystals of GRTR complexes with glutathione, trypanothione, glutathionylspermidine and of a true catalytic intermediate, the mixed disulfide between trypanothione and the enzyme. The corresponding molecular structures have been characterized at resolutions between 2.3 and 2.8 A with R factors ranging from 17.1 to 19.7%. The results indicate that the Ala34Glu mutation causes steric hindrance leading to a large displacement of the side chain of Arg347. This movement combined with the change in charge introduced by the mutations modifies the binding cavity, forcing glutathione to adopt a nonproductive binding mode and permitting trypanothione and to a certain degree also the weak substrate glutathionylspermidine to assume a productive mode.


    Related Citations: 
    • Redox Enzyme Engineering: Conversion of Human Glutathione Reductase Into a Trypanothione Reductase
      Bradley, M., Bucheler, U.S., Walsh, C.T.
      (1991) Biochemistry 30: 6124
    • Refined Structure of Glutathione Reductase at 1.54 A Resolution
      Karplus, P.A., Schulz, G.E.
      (1987) J Mol Biol 195: 701
    • The Catalytic Mechanism of Glutathione Reductase as Derived from X-Ray Diffraction Analyses of Reaction Intermediates
      Pai, E.F., Schulz, G.E.
      (1983) J Biol Chem 258: 1752
    • Comparison of the Three-Dimensional Protein and Nucleotide Structure of the Fad-Binding Domain of P-Hydroxybenzoate Hydroxylase with the Fad-as Well as Nadph-Binding Domains of Glutathione Reductase
      Wierenga, R.K., Drenth, J., Schulz, G.E.
      (1983) J Mol Biol 167: 725
    • Glutathione Reductase from Human Erythrocytes. The Sequences of the Nadph Domain and of the Interface Domain
      Krauth-Siegel, R.L., Blatterspiel, R., Saleh, M., Schiltz, E., Schirmer, R.H., Untucht-Grau, R.
      (1982) Eur J Biochem 121: 259
    • Fad-Binding Site of Glutathione Reductase
      Schulz, G.E., Schirmer, R.H., Pai, E.F.
      (1982) J Mol Biol 160: 287
    • Three-Dimensional Structure of Glutathione Reductase at 2 A Resolution
      Thieme, R., Pai, E.F., Schirmer, R.H., Schulz, G.E.
      (1981) J Mol Biol 152: 763
    • Gene Duplication in Glutathione Reductase
      Schulz, G.E.
      (1980) J Mol Biol 138: 335
    • The C-Terminal Fragment of Human Glutathione Reductase Contains the Postulated Catalytic Histidine
      Untucht-Grau, R., Schulz, G.E., Schirmer, R.H.
      (1979) FEBS Lett 105: 244
    • The Structure of the Flavoenzyme Glutathione Reductase
      Schulz, G.E., Schirmer, R.H., Sachsenheimer, W., Pai, E.F.
      (1978) Nature 273: 120
    • Low Resolution Structure of Human Erythrocyte Glutathione Reductase
      Zappe, H.A., Krohne-Ehrich, G., Schulz, G.E.
      (1977) J Mol Biol 113: 141
    • Crystals of Human Erythrocyte Glutathione Reductase
      Schulz, G.E., Zappe, H., Worthington, D.J., Rosemeyer, M.A.
      (1975) FEBS Lett 54: 86

    Organizational Affiliation

    Department of Biochemistry, University of Toronto, Ontario Cancer Institute, Canada.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
GLUTATHIONE REDUCTASEA461Homo sapiensMutation(s): 2 
Gene Names: GSRGLURGRD1
EC: 1.6.4.2 (PDB Primary Data), 1.8.1.7 (UniProt)
Find proteins for P00390 (Homo sapiens)
Explore P00390 
Go to UniProtKB:  P00390
NIH Common Fund Data Resources
PHAROS  P00390
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FAD
Query on FAD

Download CCD File 
A
FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
 Ligand Interaction
GDS
Query on GDS

Download CCD File 
A
OXIDIZED GLUTATHIONE DISULFIDE
C20 H32 N6 O12 S2
YPZRWBKMTBYPTK-BJDJZHNGSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Work: 0.189 
  • R-Value Observed: 0.189 
  • Space Group: B 1 1 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 119.4α = 90
b = 84.53β = 90
c = 63.46γ = 58.71
Software Package:
Software NamePurpose
XDSdata scaling
XDSdata reduction
X-PLORmodel building
X-PLORrefinement
X-PLORphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1997-08-12
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Derived calculations, Version format compliance