2GP4

Structure of [FeS]cluster-free Apo Form of 6-Phosphogluconate Dehydratase from Shewanella oneidensis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.49 Å
  • R-Value Free: 0.291 
  • R-Value Work: 0.230 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structure of [FeS]cluster-free Apo Form of 6-Phosphogluconate Dehydratase from Shewanella oneidensis

Schormann, N.Symersky, J.Karpova, E.Zhang, Y.Lu, S.Qiu, S.Bunzel, R.Luan, C.-H.Huang, W.Luo, M.Tsao, J.Johnson, D.Carson, M.Zhou, Q.Luo, D.Gray, R.Cao, Z.An, J.Arabshahi, A.Li, S.Stinnett, M.McKinstry, A.Lin, G.Shang, Q.Chen, Y.DeLucas, L.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
6-phosphogluconate dehydratase
A, B
628Shewanella oneidensis (strain MR-1)Mutation(s): 0 
Gene Names: edd
EC: 4.2.1.12
Find proteins for Q8EEA0 (Shewanella oneidensis (strain MR-1))
Go to UniProtKB:  Q8EEA0
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.49 Å
  • R-Value Free: 0.291 
  • R-Value Work: 0.230 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 61.364α = 90.00
b = 118.649β = 90.00
c = 160.017γ = 90.00
Software Package:
Software NamePurpose
DENZOdata reduction
HKL-2000data scaling
SOLVEphasing
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2006-05-09
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Advisory, Derived calculations, Source and taxonomy, Version format compliance