2G5W

X-ray crystal structure of Arabidopsis thaliana 12-oxophytodienoate reductase isoform 3 (AtOPR3) in complex with 8-iso prostaglandin A1 and its cofactor, flavin mononucleotide.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.576 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.202 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

Crystal structure of Arabidopsis thaliana 12-oxophytodienoate reductase isoform 3 in complex with 8-iso prostaglandin A(1).

Han, B.W.Malone, T.E.Kim, D.J.Bingman, C.A.Kim, H.J.Fox, B.G.Phillips, G.N.

(2011) Proteins 79: 3236-3241


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
12-oxophytodienoate reductase 3
A, B
391Arabidopsis thalianaMutation(s): 0 
Gene Names: OPR3 (DDE1)
EC: 1.3.1.42
Find proteins for Q9FUP0 (Arabidopsis thaliana)
Go to UniProtKB:  Q9FUP0
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
8PG
Query on 8PG

Download SDF File 
Download CCD File 
A, B
(8S,12S)-15S-HYDROXY-9-OXOPROSTA-10Z,13E-DIEN-1-OIC ACID
8-ISO PROSTAGLANDIN A1 (8-ISO PGA1)
C20 H32 O4
BGKHCLZFGPIKKU-DRSVPBQLSA-N
 Ligand Interaction
FMN
Query on FMN

Download SDF File 
Download CCD File 
A, B
FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.576 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.202 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 79.702α = 90.00
b = 86.608β = 90.00
c = 123.583γ = 90.00
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PDB_EXTRACTdata extraction
REFMACrefinement
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2006-04-04
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2012-10-24
    Type: Database references
  • Version 1.4: 2017-10-18
    Type: Refinement description