Download MendeleyCrystal structure of a putative Transposase(6457846) from DEINOCOCCUS RADIODURANS at 1.90 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
2FYX
Crystal structure of a putative transposase (dr_0177) from deinococcus radiodurans r1 at 1.90 A resolution
- PDB DOI: https://doi.org/10.2210/pdb2FYX/pdb
- Classification: UNKNOWN FUNCTION
- Organism(s): Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2006-02-08 Released: 2006-02-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.191
- R-Value Work: 0.160
- R-Value Observed: 0.162
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| transposase, putative | 143 | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 | Mutation(s): 0 Gene Names: 6457846 |  | |
UniProt | |||||
Find proteins for Q9RXX8 (Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)) Explore Q9RXX8 Go to UniProtKB: Q9RXX8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9RXX8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | C [auth A] D [auth A] E [auth A] F [auth A] G [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.191
- R-Value Work: 0.160
- R-Value Observed: 0.162
- Space Group: P 32
- Diffraction Data: https://doi.org/10.18430/M32FYX
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 66.787 | α = 90 |
| b = 66.787 | β = 90 |
| c = 81.18 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SCALA | data scaling |
| PDB_EXTRACT | data extraction |
| MOSFLM | data reduction |
| CCP4 | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2006-02-21 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2006-02-21
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance - Version 1.3: 2017-10-11
Changes: Data collection - Version 1.4: 2023-01-25
Changes: Database references, Derived calculations - Version 1.5: 2023-09-20
Changes: Data collection, Refinement description
