2FTX

Crystal structure of the yeast kinetochore Spc24/Spc25 globular domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.209 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Atomic Structure of the kinetochore Spc24p/Spc25p globular domain reveals a novel fold

Wei, R.R.Harrison, S.C.Schnell, J.R.Chou, J.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Hypothetical 25.2 kDa protein in AFG3-SEB2 intergenic region
A
90Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: SPC25
Find proteins for P40014 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: SPC25
Go to UniProtKB:  P40014
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Hypothetical 24.6 kDa protein in ILV2-ADE17 intergenic region
B
64Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: SPC24
Find proteins for Q04477 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: SPC24
Go to UniProtKB:  Q04477
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
NA
Query on NA

Download SDF File 
Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.209 
  • Space Group: I 41 2 2
Unit Cell:
Length (Å)Angle (°)
a = 84.907α = 90.00
b = 84.907β = 90.00
c = 93.195γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
HKL-2000data collection
REFMACrefinement
SOLVEphasing
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2006-06-13
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance