Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

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Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 3-mer - ABC 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 70248.05 
• Atom Count: 3972 
• Residue Count: 624 
• Unique protein chains: 3

2FLR

Novel 5-Azaindole Factor VIIa Inhibitors

• DOI: 10.2210/pdb2FLR/pdb

• Classification: HYDROLASE/BLOOD CLOTTING
• Organism(s): Homo sapiens
• Expression System: Escherichia coli


• Deposited: 2006-01-06 Released: 2007-01-23 
• Deposition Author(s): Riggs, J.R., Hu, H., Kolesnikov, A., Tong, Z., Leahy, E.M., Wesson, K.E., Shrader, W.D., Vijaykumar, D., Wahl, T.A., Sprengeler, P.A., Green, M.J., Yu, C., Katz, B.A., Young, W.B.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.35 Å
• R-Value Free: 0.259 
• R-Value Work: 0.223 

Literature

Novel 5-azaindole factor VIIa inhibitors.

Riggs, J.R., Hu, H., Kolesnikov, A., Leahy, E.M., Wesson, K.E., Shrader, W.D., Vijaykumar, D., Wahl, T.A., Tong, Z., Sprengeler, P.A., Green, M.J., Yu, C., Katz, B.A., Sanford, E., Nguyen, M., Cabuslay, R., Young, W.B.

(2006) Bioorg.Med.Chem.Lett. 16: 3197-3200

• PubMed: 16621549 
• DOI: 10.1016/j.bmcl.2006.03.049


• PubMed Abstract: 
  

The discovery and development of 5-azaindole factor VIIa inhibitors will be described.

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Organizational Affiliation: 

Celera Genomics, 180 Kimball Way, South San Francisco, CA 94080, USA. [e-mail]

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Coagulation factor VII	L	152	Homo sapiens	Mutation(s): 0  Gene Names: F7 EC: 3.4.21.21
Find proteins for P08709 (Homo sapiens) Go to Gene View: F7 Go to UniProtKB:  P08709

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details
Coagulation factor VII	H	254	Homo sapiens	Mutation(s): 0  Gene Names: F7 EC: 3.4.21.21
Find proteins for P08709 (Homo sapiens) Go to Gene View: F7 Go to UniProtKB:  P08709

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details
Tissue factor	T	218	Homo sapiens	Mutation(s): 0  Gene Names: F3
Find proteins for P13726 (Homo sapiens) Go to Gene View: F3 Go to UniProtKB:  P13726

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
7NH	H	[2'-HYDROXY-3'-(1H-PYRROLO[3,2-C]PYRIDIN-2-YL)-BIPHENYL-3-YLMETHYL]-UREA C21 H18 N4 O2 SRPOHNDQBDHONJ-UHFFFAOYSA-N

External Ligand Annotations
ID	Binding Affinity (Sequence Identity %)
7NH	Ki: 800 nM (100) BINDINGDB
7NH	Kd: 800 nM BINDINGMOAD
7NH	Ki: 800 nM PDBBIND

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.35 Å
• R-Value Free: 0.259 
• R-Value Work: 0.223 
• Space Group: P 1 2₁ 1

Unit Cell:

Length (Å)	Angle (°)
a = 77.310	α = 90.00
b = 68.640	β = 91.15
c = 77.890	γ = 90.00

Software Package:

Software Name	Purpose
X-PLOR	model building
X-PLOR	refinement
SCALEPACK	data scaling
X-PLOR	phasing

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2006-01-06 
• Released Date: 2007-01-23 
• Deposition Author(s): Riggs, J.R., Hu, H., Kolesnikov, A., Tong, Z., Leahy, E.M., Wesson, K.E., Shrader, W.D., Vijaykumar, D., Wahl, T.A., Sprengeler, P.A., Green, M.J., Yu, C., Katz, B.A., Young, W.B.

Revision History 

• Version 1.0: 2007-01-23
  Type: Initial release
• Version 1.1: 2008-05-01
  Type: Version format compliance
• Version 1.2: 2011-07-13
  Type: Version format compliance
• Version 1.3: 2017-10-18
  Type: Refinement description