2FLR

Novel 5-Azaindole Factor VIIa Inhibitors


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.223 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Novel 5-azaindole factor VIIa inhibitors.

Riggs, J.R.Hu, H.Kolesnikov, A.Leahy, E.M.Wesson, K.E.Shrader, W.D.Vijaykumar, D.Wahl, T.A.Tong, Z.Sprengeler, P.A.Green, M.J.Yu, C.Katz, B.A.Sanford, E.Nguyen, M.Cabuslay, R.Young, W.B.

(2006) Bioorg.Med.Chem.Lett. 16: 3197-3200

  • DOI: 10.1016/j.bmcl.2006.03.049

  • PubMed Abstract: 
  • The discovery and development of 5-azaindole factor VIIa inhibitors will be described.

    The discovery and development of 5-azaindole factor VIIa inhibitors will be described.


    Organizational Affiliation

    Celera Genomics, 180 Kimball Way, South San Francisco, CA 94080, USA. jennifer.riggs@yahoo.com




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Coagulation factor VII
L
152Homo sapiensGene Names: F7
EC: 3.4.21.21
Find proteins for P08709 (Homo sapiens)
Go to Gene View: F7
Go to UniProtKB:  P08709
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Coagulation factor VII
H
254Homo sapiensGene Names: F7
EC: 3.4.21.21
Find proteins for P08709 (Homo sapiens)
Go to Gene View: F7
Go to UniProtKB:  P08709
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Tissue factor
T
218Homo sapiensGene Names: F3
Find proteins for P13726 (Homo sapiens)
Go to Gene View: F3
Go to UniProtKB:  P13726
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
7NH
Query on 7NH

Download SDF File 
Download CCD File 
H
[2'-HYDROXY-3'-(1H-PYRROLO[3,2-C]PYRIDIN-2-YL)-BIPHENYL-3-YLMETHYL]-UREA
C21 H18 N4 O2
SRPOHNDQBDHONJ-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
7NHKi: 800 nM (100) BINDINGDB
7NHKd: 800 nM BINDINGMOAD
7NHKi: 800 nM PDBBIND
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.223 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 77.310α = 90.00
b = 68.640β = 91.15
c = 77.890γ = 90.00
Software Package:
Software NamePurpose
X-PLORmodel building
X-PLORrefinement
SCALEPACKdata scaling
X-PLORphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-01-23
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2017-10-18
    Type: Refinement description