2FEA

Crystal structure of MtnX phosphatase from Bacillus Subtilis at 2.00 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.160 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of MtnX phosphatase from Bacillus subtilis at 2.0 A resolution provides a structural basis for bipartite phosphomonoester hydrolysis of 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate.

Xu, Q.Saikatendu, K.S.Krishna, S.S.McMullan, D.Abdubek, P.Agarwalla, S.Ambing, E.Astakhova, T.Axelrod, H.L.Carlton, D.Chiu, H.J.Clayton, T.DiDonato, M.Duan, L.Elsliger, M.A.Feuerhelm, J.Grzechnik, S.K.Hale, J.Hampton, E.Han, G.W.Haugen, J.Jaroszewski, L.Jin, K.K.Klock, H.E.Knuth, M.W.Koesema, E.Miller, M.D.Morse, A.T.Nigoghossian, E.Okach, L.Oommachen, S.Paulsen, J.Reyes, R.Rife, C.L.Schwarzenbacher, R.van den Bedem, H.White, A.Wolf, G.Hodgson, K.O.Wooley, J.Deacon, A.M.Godzik, A.Lesley, S.A.Wilson, I.A.

(2007) Proteins 69: 433-439


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase
A, B
236Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: mtnX (ykrX)
EC: 3.1.3.87
Find proteins for O31667 (Bacillus subtilis (strain 168))
Go to UniProtKB:  O31667
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

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Download CCD File 
A, B
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A, B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 59.013α = 90.00
b = 43.104β = 98.91
c = 109.553γ = 90.00
Software Package:
Software NamePurpose
CCP4data scaling
PDB_EXTRACTdata extraction
SOLVEphasing
MOSFLMdata reduction
REFMACrefinement
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2005-12-27
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Advisory, Version format compliance