2FBE

Crystal Structure of the PRYSPRY-domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.52 Å
  • R-Value Free: 0.277 
  • R-Value Work: 0.227 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structure of the PRYSPRY-domain: Implications for autoinflammatory diseases

Gruetter, C.Briand, C.Capitani, G.Mittl, P.R.Papin, S.Tschopp, J.Gruetter, M.G.

(2006) Febs Lett. 580: 99-106

  • DOI: 10.1016/j.febslet.2005.11.076

  • PubMed Abstract: 
  • We determined the first structure of PRYSPRY, a domain found in over 500 different proteins, involved in innate immune signaling, cytokine signaling suppression, development, cell growth and retroviral restriction. The fold encompasses a 7-stranded a ...

    We determined the first structure of PRYSPRY, a domain found in over 500 different proteins, involved in innate immune signaling, cytokine signaling suppression, development, cell growth and retroviral restriction. The fold encompasses a 7-stranded and a 6-stranded antiparallel beta-sheet, arranged in a beta-sandwich. In the crystal, PRYSPRY forms a dimer where the C-terminus of an acceptor molecule binds to the concave surface of a donor molecule, which represents a putative interaction site. Mutations in the PRYSPRY domains of Pyrin, which are responsible for familial Mediterranean fever, map on the putative PRYSPRY interaction site.


    Organizational Affiliation

    Department of Biochemistry, University of Zürich, CH-8057 Zürich, Switzerland.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
PREDICTED: similar to ret finger protein-like 1
A, B, C, D
201Homo sapiensMutation(s): 0 
Gene Names: RFPL4A (RFPL4, RNF210)
Find proteins for A6NLU0 (Homo sapiens)
Go to Gene View: RFPL4A
Go to UniProtKB:  A6NLU0
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.52 Å
  • R-Value Free: 0.277 
  • R-Value Work: 0.227 
  • Space Group: P 41 2 2
Unit Cell:
Length (Å)Angle (°)
a = 77.220α = 90.00
b = 77.220β = 90.00
c = 297.299γ = 90.00
Software Package:
Software NamePurpose
CNSrefinement
SCALEPACKdata scaling
SHARPphasing
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2006-01-10
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance