Biological Assembly 1  

 3D View: Structure | 1D-3D View | Validation Report | Ligand Interaction

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 4.26 kDa 
• Atom Count: 256 
• Modelled Residue Count: 37 
• Deposited Residue Count: 37 
• Unique protein chains: 1

2F5H

Solution structure of the alpha-domain of human Metallothionein-3

• PDB DOI: 10.2210/pdb2F5H/pdb

• Classification: METAL BINDING PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2005-11-25 Released: 2006-05-30 
• Deposition Author(s): Wang, H., Zhang, Q., Cai, B., Li, H.Y., Sze, K.H., Huang, Z.X., Wu, H.M., Sun, H.Z.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 30 
• Conformers Submitted: 10 
• Selection Criteria: best converged structures 

Literature

Solution structure and dynamics of human metallothionein-3 (MT-3)

Wang, H., Zhang, Q., Cai, B., Li, H.Y., Sze, K.H., Huang, Z.X., Wu, H.M., Sun, H.Z.

(2006) FEBS Lett 580: 795-800

• PubMed: 16413543 
• DOI: 10.1016/j.febslet.2005.12.099
• Primary Citation of Related Structures:  
  2F5H


• PubMed Abstract: 
  

Alzheimer's disease is characterized by progressive loss of neurons accompanied by the formation of intraneural neurofibrillary tangles and extracellular amyloid plaques. Human neuronal growth inhibitory factor, classified as metallothionein-3 (MT-3), was found to be related to the neurotrophic activity promoting cortical neuron survival and dendrite outgrowth in the cell culture studies. We have determined the solution structure of the alpha-domain of human MT-3 (residues 32-68) by multinuclear and multidimensional NMR spectroscopy in combination with the molecular dynamic simulated annealing approach. The human MT-3 shows two metal-thiolate clusters, one in the N-terminus (beta-domain) and one in the C-terminus (alpha-domain). The overall fold of the alpha-domain is similar to that of mouse MT-3. However, human MT-3 has a longer loop in the acidic hexapeptide insertion than that of mouse MT-3. Surprisingly, the backbone dynamics of the protein revealed that the beta-domain exhibits similar internal motion to the alpha-domain, although the N-terminal residues are more flexible. Our results may provide useful information for understanding the structure-function relationship of human MT-3.

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Organizational Affiliation: 

Department of Chemistry and Open Laboratory of Chemical Biology, The University of Hong Kong, Pokfulam Road, Hong Kong, PR China.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Metallothionein-3	A	37	Homo sapiens	Mutation(s): 0  Gene Names: MT3
UniProt & NIH Common Fund Data Resources
Find proteins for P25713 (Homo sapiens) Explore P25713  Go to UniProtKB:  P25713
PHAROS:  P25713 GTEx:  ENSG00000087250

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CD	B [auth A], C [auth A], D [auth A], E [auth A]	CADMIUM ION Cd WLZRMCYVCSSEQC-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 30 
• Conformers Submitted: 10 
• Selection Criteria: best converged structures 
• OLDERADO: 2F5H Olderado

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2005-11-25 
• Released Date: 2006-05-30 
Deposition Author(s): Wang, H., Zhang, Q., Cai, B., Li, H.Y., Sze, K.H., Huang, Z.X., Wu, H.M., Sun, H.Z.

Revision History  

• Version 1.0: 2006-05-30
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-03-09
  Changes: Data collection, Database references, Derived calculations