2F2G

X-Ray Structure of Gene Product From Arabidopsis Thaliana AT3G16990


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.170 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal structure of gene locus At3g16990 from Arabidopsis thaliana

Blommel, P.G.Smith, D.W.Bingman, C.A.Dyer, D.H.Rayment, I.Holden, H.M.Fox, B.G.Phillips Jr., G.N.

(2004) Proteins 57: 221-222


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
SEED MATURATION PROTEIN PM36 HOMOLOG
A, B
221Arabidopsis thalianaMutation(s): 0 
Gene Names: TENA_E
EC: 3.5.1.-, 3.5.99.2
Find proteins for Q9ASY9 (Arabidopsis thaliana)
Go to UniProtKB:  Q9ASY9
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
HMH
Query on HMH

Download SDF File 
Download CCD File 
A, B
4-AMINO-5-HYDROXYMETHYL-2-METHYLPYRIMIDINE
C6 H9 N3 O
VUTBELPREDJDDH-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.170 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 62.700α = 90.00
b = 62.700β = 90.00
c = 287.621γ = 90.00
Software Package:
Software NamePurpose
DENZOdata reduction
PDB_EXTRACTdata extraction
RESOLVEphasing
SOLVEphasing
SCALEPACKdata scaling
MAR345data collection
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2005-12-13
    Type: Initial release
  • Version 1.1: 2008-02-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Advisory, Version format compliance
  • Version 1.3: 2017-10-18
    Type: Refinement description