2EQY | pdb_00002eqy

Solution structure of the ARID domain of Jarid1b protein

PDB DOI: https://doi.org/10.2210/pdb2EQY/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Mus musculus
Mutation(s): No

Deposited: 2007-03-30 Released: 2007-10-02
Deposition Author(s): Tanabe, W., Suzuki, S., Muto, Y., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, structures with the lowest energy, target function

wwPDB Validation 3D Report Full Report

Validation slider image for 2EQY

This is version 1.3 of the entry. See complete history.

Literature

Solution structure of the ARID domain of Jarid1b protein

Tanabe, W., Suzuki, S., Muto, Y., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 13.72 kDa
Atom Count: 965
Modeled Residue Count: 122
Deposited Residue Count: 122
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Jumonji, AT rich interactive domain 1B	A	122	Mus musculus	Mutation(s): 0 Gene Names: Jarid1b EC: 1.14.11.67
UniProt & NIH Common Fund Data Resources
Find proteins for Q80Y84 (Mus musculus) Explore Q80Y84 Go to UniProtKB: Q80Y84
IMPC: MGI:1922855
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q80Y84
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, structures with the lowest energy, target function

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-10-02

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2007-10-02
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2022-03-09
Changes: Data collection, Database references, Derived calculations
Version 1.3: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.