2EQ9 | pdb_00002eq9

Deposited: 2007-03-30 Released: 2008-04-01
Deposition Author(s): Nakai, T., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.3 of the entry. See complete history.

Literature

Nakai, T., Kamiya, N.

To be published.

Macromolecule Content

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component	A, B, D, E, G A, B, D, E, G, H, J, K	464	Thermus thermophilus HB8	Mutation(s): 0 Gene Names: TTHA0233 EC: 1.8.1.4
UniProt
Find proteins for Q5SLR0 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SLR0 Go to UniProtKB: Q5SLR0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q5SLR0
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component	C, F, I, L	41	Thermus thermophilus HB8	Mutation(s): 0 Gene Names: TTHA0232 EC: 2.3.1.168 (PDB Primary Data), 2.3.1 (UniProt)
UniProt
Find proteins for Q5SLR1 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SLR1 Go to UniProtKB: Q5SLR1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q5SLR1
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FAD Query on FAD Download Ideal Coordinates CCD File SDF format, chain M [auth A] SDF format, chain N [auth B] SDF format, chain O [auth D] SDF format, chain P [auth E] SDF format, chain Q [auth G] SDF format, chain R [auth H] SDF format, chain S [auth J] SDF format, chain T [auth K] MOL2 format, chain M [auth A] MOL2 format, chain N [auth B] MOL2 format, chain O [auth D] MOL2 format, chain P [auth E] MOL2 format, chain Q [auth G] MOL2 format, chain R [auth H] MOL2 format, chain S [auth J] MOL2 format, chain T [auth K] mmCIF format, chain M [auth A] mmCIF format, chain N [auth B] mmCIF format, chain O [auth D] mmCIF format, chain P [auth E] mmCIF format, chain Q [auth G] mmCIF format, chain R [auth H] mmCIF format, chain S [auth J] mmCIF format, chain T [auth K]	M [auth A] N [auth B] O [auth D] P [auth E] Q [auth G] M [auth A], N [auth B], O [auth D], P [auth E], Q [auth G], R [auth H], S [auth J], T [auth K]	FLAVIN-ADENINE DINUCLEOTIDE C₂₇ H₃₃ N₉ O₁₅ P₂ VWWQXMAJTJZDQX-UYBVJOGSSA-N		Interactions Focus chain M [auth A] Focus chain N [auth B] Focus chain O [auth D] Focus chain P [auth E] Focus chain Q [auth G] Focus chain R [auth H] Focus chain S [auth J] Focus chain T [auth K] Interactions & Density Focus chain M [auth A] Focus chain N [auth B] Focus chain O [auth D] Focus chain P [auth E] Focus chain Q [auth G] Focus chain R [auth H] Focus chain S [auth J] Focus chain T [auth K]

Experimental Data & Validation

Space Group: P 1

Unit Cell:

Software Package:

Entry History

Deposition Author(s):

Nakai, T.

Version 1.0: 2008-04-01
Type: Initial release
Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance
Version 1.2: 2023-10-25
Changes: Data collection, Database references, Derived calculations, Refinement description
Version 1.3: 2024-10-30
Changes: Structure summary