2EQ8

Crystal structure of lipoamide dehydrogenase from thermus thermophilus HB8 with psbdp


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.207 
  • R-Value Observed: 0.207 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal structure of lipoamide dehydrogenase from Thermus thermophilus HB8

Nakai, T.Kamiya, N.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 componentABDE464Thermus thermophilus HB8Mutation(s): 0 
Gene Names: TTHA0233
EC: 1.8.1.4
Find proteins for Q5SLR0 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Explore Q5SLR0 
Go to UniProtKB:  Q5SLR0
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 componentCF40N/AMutation(s): 0 
EC: 2.3.1.12
Find proteins for Q5SLV9 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Explore Q5SLV9 
Go to UniProtKB:  Q5SLV9
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FAD
Query on FAD

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A, B, D, E
FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.207 
  • R-Value Observed: 0.207 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 85.758α = 90
b = 104.082β = 107.3
c = 112.856γ = 90
Software Package:
Software NamePurpose
CNSrefinement
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
AMoREphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-04-01
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Source and taxonomy, Version format compliance