2EQ7

Crystal structure of lipoamide dehydrogenase from thermus thermophilus HB8 with psbdo

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.238 
  • R-Value Work: 0.207 
  • R-Value Observed: 0.207 

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Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history. 


Literature

Crystal structure of lipoamide dehydrogenase from Thermus thermophilus HB8

Nakai, T., Kamiya, N.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
2-oxoglutarate dehydrogenase E3 componentA, B455Thermus thermophilus HB8Mutation(s): 0 
Gene Names: TTHA0287
EC: 1.8.1.4
UniProt
Find proteins for Q5SLK6 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
Explore Q5SLK6 
Go to UniProtKB:  Q5SLK6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5SLK6
Protein Feature View
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
2-oxoglutarate dehydrogenase E2 componentC40N/AMutation(s): 0 
EC: 2.3.1.61
UniProt
Find proteins for Q5SLK5 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
Explore Q5SLK5 
Go to UniProtKB:  Q5SLK5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5SLK5
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FAD
Query on FAD
Download Ideal Coordinates CCD File 
D [auth A],
F [auth B]		FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N		 Ligand Interaction
NAD
Query on NAD
Download Ideal Coordinates CCD File 
E [auth A],
G [auth B]		NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N		 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.238 
  • R-Value Work: 0.207 
  • R-Value Observed: 0.207 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 85.028α = 90
b = 107.073β = 90
c = 131.706γ = 90
Software Package:
Software NamePurpose
CNSrefinement
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
AMoREphasing

Structure Validation

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Ligand Structure Quality Assessment 


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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2008-04-01
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Source and taxonomy, Version format compliance