2EP5 | pdb_00002ep5

Structural study of Project ID ST1242 from Sulfolobus tokodaii strain7

PDB DOI: https://doi.org/10.2210/pdb2EP5/pdb

Classification: OXIDOREDUCTASE
Organism(s): Sulfurisphaera tokodaii
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-03-29 Released: 2007-10-02
Deposition Author(s): Asada, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free:
0.242 (Depositor), 0.241 (DCC)
R-Value Work:
0.191 (Depositor), 0.190 (DCC)
R-Value Observed:
0.194 (Depositor)

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This is version 1.2 of the entry. See complete history.

Literature

Structural study of Project ID ST1242 from Sulfolobus tokodaii strain7

Asada, Y., Kunishima, N.

To be published.

Macromolecule Content

Total Structure Weight: 154.98 kDa
Atom Count: 11,500
Modeled Residue Count: 1,395
Deposited Residue Count: 1,400
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
350aa long hypothetical aspartate-semialdehyde dehydrogenase	A, B, C, D	350	Sulfurisphaera tokodaii	Mutation(s): 0 EC: 1.2.1.11 (PDB Primary Data), 1.2.1.75 (UniProt)
UniProt
Find proteins for Q971Y6 (Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)) Explore Q971Y6 Go to UniProtKB: Q971Y6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q971Y6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.242 (Depositor), 0.241 (DCC)
R-Value Work: 0.191 (Depositor), 0.190 (DCC)
R-Value Observed: 0.194 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 70.157	α = 68.102
b = 73.986	β = 68.393
c = 91.552	γ = 86.036

Software Package:

Software Name	Purpose
HKL-2000	data collection
MOLREP	phasing
CNS	refinement
HKL-2000	data reduction
SCALEPACK	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-10-02

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2007-10-02
Type: Initial release
Version 1.1: 2011-07-13
Changes: Derived calculations, Version format compliance
Version 1.2: 2024-03-13
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.