2EJ8 | pdb_00002ej8

Crystal structure of APPL1 PTB domain at 1.8A

PDB DOI: https://doi.org/10.2210/pdb2EJ8/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2007-03-15 Released: 2008-03-18
Deposition Author(s): Tanabe, H., Hosaka, T., Murayama, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.84 Å
R-Value Free:
0.230 (Depositor), 0.214 (DCC)
R-Value Work:
0.193 (Depositor), 0.208 (DCC)
R-Value Observed:
0.195 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 2EJ8

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of APPL1 PTB domain at 1.8A

Tanabe, H., Hosaka, T., Murayama, K., Terada, T., Shirouzu, M., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 36.11 kDa
Atom Count: 2,273
Modeled Residue Count: 264
Deposited Residue Count: 320
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DCC-interacting protein 13 alpha	A, B	160	Homo sapiens	Mutation(s): 0 Gene Names: APPL1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UKG1 (Homo sapiens) Explore Q9UKG1 Go to UniProtKB: Q9UKG1
PHAROS: Q9UKG1 GTEx: ENSG00000157500
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9UKG1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.84 Å
R-Value Free: 0.230 (Depositor), 0.214 (DCC)
R-Value Work: 0.193 (Depositor), 0.208 (DCC)
R-Value Observed: 0.195 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.23	α = 90
b = 63.566	β = 102.67
c = 52.449	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data collection
DENZO	data reduction
SCALEPACK	data scaling
SnB	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2008-03-18

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2008-03-18
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2024-03-13
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.