2EI1

Anaerobic Crystal Strucutre Analysis of the 1,2-dihydroxynaphthalene dioxygeanse of Pseudomonas sp. strain C18 complexes to 1,2-dihydroxynaphthalene


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.52 Å
  • R-Value Free: 0.180 
  • R-Value Work: 0.171 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural explanation for success and failure in the enzymatic ring-cleavage of 3,4 dihydroxybiphenyl and related PCB metabolites.

Neau, D.B.Kelker, M.S.Maaroufi, H.Colbert, C.L.Eltis, L.D.Bolin, J.T.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
1,2-dihydroxynaphthalene dioxygenase
A
302Pseudomonas sp. (strain C18)Mutation(s): 0 
Gene Names: doxG
EC: 1.13.11.56
Find proteins for P0A108 (Pseudomonas sp. (strain C18))
Go to UniProtKB:  P0A108
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
D1N
Query on D1N

Download SDF File 
Download CCD File 
A
NAPHTHALENE-1,2-DIOL
1,2-DIHYDROXYNAPHTHALENE
C10 H8 O2
NXPPAOGUKPJVDI-UHFFFAOYSA-N
 Ligand Interaction
FE2
Query on FE2

Download SDF File 
Download CCD File 
A
FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.52 Å
  • R-Value Free: 0.180 
  • R-Value Work: 0.171 
  • Space Group: I 4 2 2
Unit Cell:
Length (Å)Angle (°)
a = 117.848α = 90.00
b = 117.848β = 90.00
c = 120.965γ = 90.00
Software Package:
Software NamePurpose
AMoREphasing
HKL-2000data reduction
REFMACrefinement
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-02-19
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Derived calculations, Source and taxonomy, Version format compliance