2EF5

Crystal structure of the arginase from thermus thermophilus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.233 
  • R-Value Observed: 0.233 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal structure of the arginase from thermus thermophilus

Kumarevel, T.S.Karthe, P.Kuramitsu, S.Yokoyama, S.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Arginase290Thermus thermophilusMutation(s): 0 
Gene Names: TTHA1496
EC: 3.5.3.1
UniProt
Find proteins for Q5SI78 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
Explore Q5SI78 
Go to UniProtKB:  Q5SI78
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5SI78
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
LYS
Query on LYS

Download Ideal Coordinates CCD File 
DA [auth G],
K [auth A],
O [auth B],
S [auth D],
W [auth E],
DA [auth G],
K [auth A],
O [auth B],
S [auth D],
W [auth E],
Z [auth F]
LYSINE
C6 H15 N2 O2
KDXKERNSBIXSRK-YFKPBYRVSA-O
 Ligand Interaction
GAI
Query on GAI

Download Ideal Coordinates CCD File 
CA [auth G],
I [auth A],
J [auth A],
N [auth B],
R [auth D],
CA [auth G],
I [auth A],
J [auth A],
N [auth B],
R [auth D],
V [auth E]
GUANIDINE
C H5 N3
ZRALSGWEFCBTJO-UHFFFAOYSA-N
 Ligand Interaction
MN
Query on MN

Download Ideal Coordinates CCD File 
AA [auth G],
BA [auth G],
G [auth A],
H [auth A],
L [auth B],
AA [auth G],
BA [auth G],
G [auth A],
H [auth A],
L [auth B],
M [auth B],
P [auth D],
Q [auth D],
T [auth E],
U [auth E],
X [auth F],
Y [auth F]
MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.233 
  • R-Value Observed: 0.233 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 150.795α = 90
b = 97.478β = 108.66
c = 126.463γ = 90
Software Package:
Software NamePurpose
CNSrefinement
BSSdata collection
HKL-2000data reduction
HKL-2000data scaling
CCP4phasing

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2007-04-14
    Type: Initial release
  • Version 1.1: 2007-12-03
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Derived calculations, Version format compliance