2EDB | pdb_00002edb

Solution structure of the fourth fibronectin type III domain of human Netrin receptor DCC

• PDB DOI: https://doi.org/10.2210/pdb2EDB/pdb
• BMRB: 11099

• Classification: APOPTOSIS
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2007-02-14 Released: 2008-03-04 
• Deposition Author(s): Tochio, N., Koshiba, S., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the least restraint violations,target function 

Literature

Solution structure of the fourth fibronectin type III domain of human Netrin receptor DCC

Tochio, N., Koshiba, S., Kigawa, T., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 12.47 kDa 
• Atom Count: 877 
• Modeled Residue Count: 116 
• Deposited Residue Count: 116 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Netrin receptor DCC	A	116	Homo sapiens	Mutation(s): 0  Gene Names: DCC
UniProt & NIH Common Fund Data Resources
Find proteins for P43146 (Homo sapiens) Explore P43146  Go to UniProtKB:  P43146
PHAROS:  P43146 GTEx:  ENSG00000187323

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the least restraint violations,target function 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-03-04 
Deposition Author(s): Tochio, N., Koshiba, S., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2008-03-04
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2022-03-09
  Changes: Data collection, Database references, Derived calculations
• Version 1.3: 2024-05-29
  Changes: Data collection