2ECE | pdb_00002ece

X-ray structure of hypothetical selenium-binding protein from Sulfolobus tokodaii, ST0059

PDB DOI: https://doi.org/10.2210/pdb2ECE/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Sulfurisphaera tokodaii
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-02-13 Released: 2008-01-01
Deposition Author(s): Yamada, M., Yoshida, H., Kuramitsu, S., Kamitori, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.207 (Depositor), 0.207 (DCC)
R-Value Work:
0.193 (Depositor), 0.193 (DCC)
R-Value Observed:
0.193 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

X-ray structure of hypothetical selenium-binding protein from Sulfolobus tokodaii, ST0059

Yamada, M., Yoshida, H., Kuramitsu, S., Kamitori, S.

To be published.

Macromolecule Content

Total Structure Weight: 52.6 kDa
Atom Count: 3,871
Modeled Residue Count: 455
Deposited Residue Count: 462
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
462aa long hypothetical selenium-binding protein	A	462	Sulfurisphaera tokodaii	Mutation(s): 0
UniProt
Find proteins for Q976Y0 (Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)) Explore Q976Y0 Go to UniProtKB: Q976Y0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q976Y0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.207 (Depositor), 0.207 (DCC)
R-Value Work: 0.193 (Depositor), 0.193 (DCC)
R-Value Observed: 0.193 (Depositor)

Space Group: I 2₁ 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 142.196	α = 90
b = 142.196	β = 90
c = 142.196	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
ADSC	data collection
HKL-2000	data reduction
HKL-2000	data scaling
MLPHARE	phasing
CNS	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2008-01-01

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2008-01-01
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2024-10-30
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.