2EC1 | pdb_00002ec1

Solution structure of the RanBD1 domain from human Nucleoporin 50 kDa

PDB DOI: https://doi.org/10.2210/pdb2EC1/pdb

Classification: TRANSPORT PROTEIN
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2007-02-09 Released: 2007-08-14
Deposition Author(s): Zhang, H.P., Kurosaki, C., Yoshida, M., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, structures with the lowest energy, target function

wwPDB Validation 3D Report Full Report

Validation slider image for 2EC1

This is version 1.3 of the entry. See complete history.

Literature

Solution structure of the RanBD1 domain from human Nucleoporin 50 kDa

Zhang, H.P., Kurosaki, C., Yoshida, M., Hayashi, F., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 13.87 kDa
Atom Count: 932
Modeled Residue Count: 118
Deposited Residue Count: 125
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Nucleoporin 50 kDa	A	125	Homo sapiens	Mutation(s): 0 Gene Names: NUP50, NPAP60L, PRO1146
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UKX7 (Homo sapiens) Explore Q9UKX7 Go to UniProtKB: Q9UKX7
PHAROS: Q9UKX7 GTEx: ENSG00000093000
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9UKX7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, structures with the lowest energy, target function

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-08-14

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2007-08-14
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2022-03-09
Changes: Data collection, Database references, Derived calculations
Version 1.3: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.