2EBR | pdb_00002ebr

Solution structure of the fourth zf-RanBP domain from human Nuclear pore complex protein Nup153

PDB DOI: https://doi.org/10.2210/pdb2EBR/pdb

Classification: TRANSPORT PROTEIN
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2007-02-09 Released: 2007-08-14
Deposition Author(s): Zhang, H.P., Nagashima, T., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, structures with the lowest energy, target function

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history.

Literature

Solution structure of the fourth zf-RanBP domain from human Nuclear pore complex protein Nup153

Zhang, H.P., Nagashima, T., Hayashi, F., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 4.84 kDa
Atom Count: 331
Modeled Residue Count: 47
Deposited Residue Count: 47
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Nuclear pore complex protein Nup153	A	47	Homo sapiens	Mutation(s): 0 Gene Names: NUP153
UniProt & NIH Common Fund Data Resources
Find proteins for P49790 (Homo sapiens) Explore P49790 Go to UniProtKB: P49790
PHAROS: P49790 GTEx: ENSG00000124789
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P49790
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, structures with the lowest energy, target function

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-08-14

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2007-08-14
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2022-03-09
Changes: Data collection, Database references, Derived calculations
Version 1.3: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.