2E8B | pdb_00002e8b

Crystal structure of the putative protein (Aq1419) from Aquifex aeolicus VF5

PDB DOI: https://doi.org/10.2210/pdb2E8B/pdb

Classification: BIOSYNTHETIC PROTEIN
Organism(s): Aquifex aeolicus VF5
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-01-19 Released: 2008-01-22
Deposition Author(s): Kumarevel, T.S., Malathy sony, S.M., Ponnuswamy, M.N., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.61 Å
R-Value Free:
0.261 (Depositor), 0.262 (DCC)
R-Value Work:
0.239 (Depositor), 0.240 (DCC)
R-Value Observed:
0.239 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 2E8B

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of the putative protein (Aq1419) from Aquifex aeolicus VF5

Kumarevel, T.S., Malathy Sony, S.M., Ponnuswamy, M.N., Kuramitsu, S., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 23.39 kDa
Atom Count: 1,685
Modeled Residue Count: 185
Deposited Residue Count: 201
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable molybdopterin-guanine dinucleotide biosynthesis protein A	A	201	Aquifex aeolicus VF5	Mutation(s): 0 Gene Names: mobA EC: 2.7.7.77
UniProt
Find proteins for O67413 (Aquifex aeolicus (strain VF5)) Explore O67413 Go to UniProtKB: O67413
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O67413
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.61 Å
R-Value Free: 0.261 (Depositor), 0.262 (DCC)
R-Value Work: 0.239 (Depositor), 0.240 (DCC)
R-Value Observed: 0.239 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 51.106	α = 90
b = 56.795	β = 90
c = 62.716	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
ADSC	data collection
HKL-2000	data reduction
HKL-2000	data scaling
SOLVE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2008-01-22

Deposition Author(s):

Kumarevel, T.S.

Malathy sony, S.M.

Ponnuswamy, M.N.

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2008-01-22
Type: Initial release
Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance
Version 1.2: 2024-03-13
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.