2E7V | pdb_00002e7v

Crystal structure of SEA domain of transmembrane protease from Mus musculus

• PDB DOI: https://doi.org/10.2210/pdb2E7V/pdb

• Classification: HYDROLASE
• Organism(s): Mus musculus
• Mutation(s): No 


• Deposited: 2007-01-15 Released: 2007-07-17 
• Deposition Author(s): Xie, Y., Kishishita, S., Murayama, K., Hori-Takemoto, C., Shirozu, M., Yokoyama, S., Chen, L., Liu, Z.J., Wang, B.C., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.92 Å
• R-Value Free: 
  0.241 (Depositor), 0.240 (DCC) 
• R-Value Work: 
  0.191 (Depositor), 0.190 (DCC) 
• R-Value Observed: 
  0.191 (Depositor) 

Literature

Crystal structure of SEA domain of transmembrane protease from Mus musculus

Xie, Y., Kishishita, S., Murayama, K., Hori-Takemoto, C., Shirozu, M., Yokoyama, S., Chen, L., Liu, Z.J., Wang, B.C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 13.91 kDa 
• Atom Count: 980 
• Modeled Residue Count: 115 
• Deposited Residue Count: 121 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transmembrane protease	A	121	Mus musculus	Mutation(s): 0  EC: 3.4.21
UniProt
Find proteins for Q8VHK8 (Mus musculus) Explore Q8VHK8  Go to UniProtKB:  Q8VHK8

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.92 Å
• R-Value Free:  0.241 (Depositor), 0.240 (DCC) 
• R-Value Work:  0.191 (Depositor), 0.190 (DCC) 
• R-Value Observed: 0.191 (Depositor) 

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 37.72	α = 90
b = 42.74	β = 90
c = 117.7	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data collection
HKL-2000	data reduction
SCALEPACK	data scaling
SOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-07-17 
Deposition Author(s): Xie, Y., Kishishita, S., Murayama, K., Hori-Takemoto, C., Shirozu, M., Yokoyama, S., Chen, L., Liu, Z.J., Wang, B.C., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2007-07-17
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2019-12-25
  Changes: Data collection
• Version 1.4: 2024-03-13
  Changes: Data collection, Database references