2DZK | pdb_00002dzk

Structure of the UBX domain in Mouse UBX Domain-Containing Protein 2

PDB DOI: https://doi.org/10.2210/pdb2DZK/pdb
BMRB: 11281

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Mus musculus
Mutation(s): No

Deposited: 2006-09-29 Released: 2007-03-29
Deposition Author(s): Zhao, C., Yoneyama, M., Koshiba, S., Watanabe, S., Harada, T., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations,target function

wwPDB Validation 3D Report Full Report

Validation slider image for 2DZK

This is version 1.4 of the entry. See complete history.

Literature

Structure of the UBX domain in Mouse UBX Domain-Containing Protein 2

Zhao, C., Yoneyama, M., Koshiba, S., Watanabe, S., Harada, T., Kigawa, T., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 11.89 kDa
Atom Count: 836
Modeled Residue Count: 109
Deposited Residue Count: 109
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
UBX domain-containing protein 2	A	109	Mus musculus	Mutation(s): 0 Gene Names: Ubxd2, Ubxdc1
UniProt & NIH Common Fund Data Resources
Find proteins for Q8VCH8 (Mus musculus) Explore Q8VCH8 Go to UniProtKB: Q8VCH8
IMPC: MGI:1915062
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8VCH8
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations,target function

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2007-03-29

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2007-03-29
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2022-03-09
Changes: Data collection, Database references, Derived calculations
Version 1.4: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.