2DYF | pdb_00002dyf

Solution structure of the first WW domain of FBP11 / HYPA (FBP11 WW1) complexed with a PL (PPLP) motif peptide ligand

PDB DOI: https://doi.org/10.2210/pdb2DYF/pdb
BMRB: 6721

Classification: PROTEIN BINDING
Organism(s): Homo sapiens, Saccharomyces cerevisiae
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2006-09-11 Released: 2006-10-24
Deposition Author(s): Kato, Y., Miyakawa, T., Kurita, J., Tanokura, M.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function

wwPDB Validation 3D Report Full Report

Validation slider image for 2DYF

This is version 1.4 of the entry. See complete history.

Literature

Complex structure of fbp11 ww1 and a pl ligand reveals the mechanism of proline-rich ligand recognition by group-II/III ww domains

Kato, Y., Miyakawa, T., Kurita, J., Tanokura, M.

To be published.

Macromolecule Content

Total Structure Weight: 4.51 kDa
Atom Count: 317
Modeled Residue Count: 39
Deposited Residue Count: 39
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Huntingtin-interacting protein HYPA/FBP11	A	30	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for O75400 (Homo sapiens) Explore O75400 Go to UniProtKB: O75400
PHAROS: O75400 GTEx: ENSG00000196504
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O75400
Sequence Annotations Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
PL (PPLP) motif peptide from Myosin tail region-interacting protein MTI1	B	9	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P47068 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P47068 Go to UniProtKB: P47068
Entity Groups
UniProt Group	P47068
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function

Structure Validation

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Entry History

Deposition Data

Released Date: 2006-10-24

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2006-10-24
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2022-03-09
Changes: Data collection, Database references, Derived calculations, Experimental preparation
Version 1.4: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.