2DWZ

Structure of the Oncoprotein Gankyrin in Complex with S6 ATPase of the 26S Proteasome


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.194 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structure of the Oncoprotein Gankyrin in Complex with S6 ATPase of the 26S Proteasome

Nakamura, Y.Nakano, K.Umehara, T.Tanaka, A.Padmanabhan, B.Yokoyama, S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
26S proteasome non-ATPase regulatory subunit 10
A, C
231Mus musculusMutation(s): 0 
Gene Names: Psmd10
Find proteins for Q9Z2X2 (Mus musculus)
Go to UniProtKB:  Q9Z2X2
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
26S protease regulatory subunit 6B
B, D
83Rattus norvegicusMutation(s): 0 
Gene Names: Psmc4 (Tbp7)
Find proteins for Q63570 (Rattus norvegicus)
Go to UniProtKB:  Q63570
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EPE
Query on EPE

Download SDF File 
Download CCD File 
A
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.194 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 41.991α = 90.00
b = 92.319β = 90.00
c = 167.191γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
MOLREPphasing
SCALEPACKdata scaling
CNSrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-08-28
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance