Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

Standalone Viewers  
Protein Workshop | Ligand Explorer

Global Symmetry: Cyclic - C3  (3D View)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

 3D View: Structure | Electron Density | Ligand Interaction

Standalone Viewers  
Protein Workshop | Ligand Explorer

Global Symmetry: Dihedral - D3  (3D View)
Global Stoichiometry: Homo 6-mer - A6 

Biological assembly 2 generated by PQS (software)

Macromolecule Content

• Total Structure Weight: 16205.84 
• Atom Count: 1143 
• Residue Count: 143 
• Unique protein chains: 1

2DT4

Crystal structure of Pyrococcus horikoshii a plant- and prokaryote-conserved (PPC) protein at 1.60 resolution

• DOI: 10.2210/pdb2DT4/pdb

• Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION
• Organism(s): Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
• Expression System: Escherichia coli BL21(DE3)


• Deposited: 2006-07-10 Released: 2007-05-22 
• Deposition Author(s): Lin, L., Nakano, H., Uchiyama, S., Fujimoto, S., Matsunaga, S., Nakamura, S.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.6 Å
• R-Value Free: 0.193 
• R-Value Work: 0.164 

Literature

Crystal structure of Pyrococcus horikoshii PPC protein at 1.60 A resolution

Lin, L., Nakano, H., Nakamura, S., Uchiyama, S., Fujimoto, S., Matsunaga, S., Kobayashi, Y., Ohkubo, T., Fukui, K.

(2007) Proteins 67: 505-507

• PubMed: 17295322 
• DOI: 10.1002/prot.21270

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Hypothetical protein PH0802	A	143	Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)	Mutation(s): 0
Find proteins for O58532 (Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)) Go to UniProtKB:  O58532

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
GOL	A	GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.6 Å
• R-Value Free: 0.193 
• R-Value Work: 0.164 
• Space Group: P 6₃ 2 2

Unit Cell:

Length (Å)	Angle (°)
a = 53.922	α = 90.00
b = 53.922	β = 90.00
c = 159.181	γ = 120.00

Software Package:

Software Name	Purpose
SOLVE	phasing
REFMAC	refinement

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2006-07-10 
• Released Date: 2007-05-22 
• Deposition Author(s): Lin, L., Nakano, H., Uchiyama, S., Fujimoto, S., Matsunaga, S., Nakamura, S.

Revision History 

• Version 1.0: 2007-05-22
  Type: Initial release
• Version 1.1: 2008-04-30
  Type: Version format compliance
• Version 1.2: 2011-07-13
  Type: Derived calculations, Version format compliance