2DSN

Crystal structure of T1 lipase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.174 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Novel cation-pi interaction revealed by crystal structure of thermoalkalophilic lipase

Matsumura, H.Yamamoto, T.Leow, T.C.Mori, T.Salleh, A.B.Basri, M.Inoue, T.Kai, Y.Rahman, R.N.Z.R.A.

(2007) Proteins 70: 592-598


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Thermostable lipase
A, B
387Geobacillus zalihaeMutation(s): 0 
EC: 3.1.1.3
Find proteins for Q842J9 (Geobacillus zalihae)
Go to UniProtKB:  Q842J9
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

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A, B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
NA
Query on NA

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A, B
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

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A, B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
CA
Query on CA

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A, B
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.174 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 117.731α = 90.00
b = 81.270β = 97.09
c = 99.912γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
MOLREPphasing
CNSrefinement
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2006-07-03 
  • Released Date: 2007-07-17 
  • Deposition Author(s): Matsumura, H., Kai, Y.

Revision History 

  • Version 1.0: 2007-07-17
    Type: Initial release
  • Version 1.1: 2007-12-17
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance