2DPW | pdb_00002dpw

Hpothetical Transferase Structure from Thermus thermophilus

• PDB DOI: https://doi.org/10.2210/pdb2DPW/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Thermus thermophilus HB8
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2006-05-17 Released: 2007-05-22 
• Deposition Author(s): Rehse, P.H., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.90 Å
• R-Value Free: 
  0.281 (Depositor), 0.272 (DCC) 
• R-Value Work: 
  0.226 (Depositor), 0.224 (DCC) 
• R-Value Observed: 
  0.226 (Depositor) 

Literature

Hypothetical Transferase from Thermus thermophilus

Rehse, P.H., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 25.51 kDa 
• Atom Count: 1,816 
• Modeled Residue Count: 231 
• Deposited Residue Count: 232 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein TTHA0179	A	232	Thermus thermophilus HB8	Mutation(s): 2
UniProt
Find proteins for Q5SLW4 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SLW4  Go to UniProtKB:  Q5SLW4

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NA	B [auth A]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.90 Å
• R-Value Free:  0.281 (Depositor), 0.272 (DCC) 
• R-Value Work:  0.226 (Depositor), 0.224 (DCC) 
• R-Value Observed: 0.226 (Depositor) 

Space Group: P 6₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 76.19	α = 90
b = 76.19	β = 90
c = 196.98	γ = 120

Software Package:

Software Name	Purpose
d*TREK	data scaling
SOLVE	phasing
RESOLVE	phasing
CNS	refinement
PDB_EXTRACT	data extraction
CrystalClear	data reduction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-05-22 
Deposition Author(s): Rehse, P.H., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2007-05-22
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Source and taxonomy, Version format compliance
• Version 1.3: 2024-11-20
  Changes: Data collection, Database references, Derived calculations, Structure summary