2DMV | pdb_00002dmv

Solution structure of the second ww domain of Itchy homolog E3 ubiquitin protein ligase (Itch)

PDB DOI: https://doi.org/10.2210/pdb2DMV/pdb

Classification: LIGASE
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2006-04-24 Released: 2006-10-24
Deposition Author(s): Ohnishi, S., Paakkonen, K., Tochio, N., Tomizawa, T., Koshiba, S., Inoue, M., Guntert, P., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function, structures with the lowest energy, structures with the least restraint violations

wwPDB Validation 3D Report Full Report

Validation slider image for 2DMV

This is version 1.4 of the entry. See complete history.

Literature

Solution structure of the second ww domain of Itchy homolog E3 ubiquitin protein ligase (Itch)

Ohnishi, S., Paakkonen, K., Tochio, N., Tomizawa, T., Koshiba, S., Inoue, M., Guntert, P., Kigawa, T., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 4.72 kDa
Atom Count: 333
Modeled Residue Count: 43
Deposited Residue Count: 43
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Itchy homolog E3 ubiquitin protein ligase	A	43	Homo sapiens	Mutation(s): 0 Gene Names: ITCH EC: 6.3.2 (PDB Primary Data), 2.3.2.26 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for Q96J02 (Homo sapiens) Explore Q96J02 Go to UniProtKB: Q96J02
PHAROS: Q96J02 GTEx: ENSG00000078747
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q96J02
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function, structures with the lowest energy, structures with the least restraint violations

Structure Validation

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Entry History

Deposition Data

Released Date: 2006-10-24

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2006-10-24
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2022-03-09
Changes: Data collection, Database references, Derived calculations
Version 1.4: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.