2DMV

Solution structure of the second ww domain of Itchy homolog E3 ubiquitin protein ligase (Itch)

• PDB DOI: https://doi.org/10.2210/pdb2DMV/pdb

• Classification: LIGASE
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2006-04-24 Released: 2006-10-24 
• Deposition Author(s): Ohnishi, S., Paakkonen, K., Tochio, N., Tomizawa, T., Koshiba, S., Inoue, M., Guntert, P., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function, structures with the lowest energy, structures with the least restraint violations 

Literature

Solution structure of the second ww domain of Itchy homolog E3 ubiquitin protein ligase (Itch)

Ohnishi, S., Paakkonen, K., Tochio, N., Tomizawa, T., Koshiba, S., Inoue, M., Guntert, P., Kigawa, T., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 4.72 kDa 
• Atom Count: 333 
• Modelled Residue Count: 43 
• Deposited Residue Count: 43 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Itchy homolog E3 ubiquitin protein ligase	A	43	Homo sapiens	Mutation(s): 0  Gene Names: ITCH EC: 6.3.2 (PDB Primary Data), 2.3.2.26 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for Q96J02 (Homo sapiens) Explore Q96J02  Go to UniProtKB:  Q96J02
PHAROS:  Q96J02 GTEx:  ENSG00000078747

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function, structures with the lowest energy, structures with the least restraint violations 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-10-24 
Deposition Author(s): Ohnishi, S., Paakkonen, K., Tochio, N., Tomizawa, T., Koshiba, S., Inoue, M., Guntert, P., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2006-10-24
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-03-09
  Changes: Data collection, Database references, Derived calculations
• Version 1.4: 2024-05-29
  Changes: Data collection