2DMF | pdb_00002dmf

An extended conformation of the RWD domain of human Ring finger protein 25

PDB DOI: https://doi.org/10.2210/pdb2DMF/pdb
BMRB: 11303

Classification: LIGASE
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2006-04-21 Released: 2006-10-21
Deposition Author(s): Yoneyama, M., Tochio, N., Koshiba, S., Watabe, S., Harada, T., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function, structures with the least restraint violations

wwPDB Validation 3D Report Full Report

Validation slider image for 2DMF

This is version 1.4 of the entry. See complete history.

Literature

An extended conformation of the RWD domain of human Ring finger protein 25

Yoneyama, M., Tochio, N., Koshiba, S., Watabe, S., Harada, T., Kigawa, T., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 14.95 kDa
Atom Count: 1,052
Modeled Residue Count: 137
Deposited Residue Count: 137
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RING finger protein 25	A	137	Homo sapiens	Mutation(s): 0 Gene Names: RNF25 EC: 6.3.2 (PDB Primary Data), 2.3.2.27 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for Q96BH1 (Homo sapiens) Explore Q96BH1 Go to UniProtKB: Q96BH1
PHAROS: Q96BH1 GTEx: ENSG00000163481
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q96BH1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function, structures with the least restraint violations

Structure Validation

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Entry History

Deposition Data

Released Date: 2006-10-21

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2006-10-21
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2022-03-09
Changes: Data collection, Database references, Derived calculations
Version 1.4: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.