2DLH | pdb_00002dlh

Solution structure of the second fn3 domain of human receptor-type tyrosine-protein phosphatase delta

• PDB DOI: https://doi.org/10.2210/pdb2DLH/pdb

• Classification: HYDROLASE
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2006-04-18 Released: 2006-10-18 
• Deposition Author(s): Seimiya, K., Hayashi, F., Yoshida, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

---

Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function, structures with the lowest energy, structures with the least restraint violations 

Literature

Solution structure of the second fn3 domain of human receptor-type tyrosine-protein phosphatase delta

Seimiya, K., Hayashi, F., Yoshida, M., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 12.93 kDa 
• Atom Count: 907 
• Modelled Residue Count: 121 
• Deposited Residue Count: 121 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Receptor-type tyrosine-protein phosphatase delta	A	121	Homo sapiens	Mutation(s): 0  Gene Names: PTPRD EC: 3.1.3.48
UniProt & NIH Common Fund Data Resources
Find proteins for P23468 (Homo sapiens) Explore P23468  Go to UniProtKB:  P23468
PHAROS:  P23468 GTEx:  ENSG00000153707

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function, structures with the lowest energy, structures with the least restraint violations 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-10-18 
Deposition Author(s): Seimiya, K., Hayashi, F., Yoshida, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2006-10-18
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-03-09
  Changes: Data collection, Database references, Derived calculations
• Version 1.4: 2024-05-29
  Changes: Data collection