2DLH | pdb_00002dlh

Solution structure of the second fn3 domain of human receptor-type tyrosine-protein phosphatase delta

PDB DOI: https://doi.org/10.2210/pdb2DLH/pdb

Classification: HYDROLASE
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2006-04-18 Released: 2006-10-18
Deposition Author(s): Seimiya, K., Hayashi, F., Yoshida, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function, structures with the lowest energy, structures with the least restraint violations

wwPDB Validation 3D Report Full Report

Validation slider image for 2DLH

This is version 1.4 of the entry. See complete history.

Literature

Solution structure of the second fn3 domain of human receptor-type tyrosine-protein phosphatase delta

Seimiya, K., Hayashi, F., Yoshida, M., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 12.93 kDa
Atom Count: 907
Modeled Residue Count: 121
Deposited Residue Count: 121
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Receptor-type tyrosine-protein phosphatase delta	A	121	Homo sapiens	Mutation(s): 0 Gene Names: PTPRD EC: 3.1.3.48
UniProt & NIH Common Fund Data Resources
Find proteins for P23468 (Homo sapiens) Explore P23468 Go to UniProtKB: P23468
PHAROS: P23468 GTEx: ENSG00000153707
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P23468
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function, structures with the lowest energy, structures with the least restraint violations

Structure Validation

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Entry History

Deposition Data

Released Date: 2006-10-18

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2006-10-18
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2022-03-09
Changes: Data collection, Database references, Derived calculations
Version 1.4: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.