2DK5 | pdb_00002dk5

Solution structure of Winged-Helix domain in RNA polymerase III 39KDa polypeptide

PDB DOI: https://doi.org/10.2210/pdb2DK5/pdb

Classification: TRANSLATION, TRANSFERASE
Organism(s): Homo sapiens
Mutation(s): Yes

Deposited: 2006-04-06 Released: 2006-10-06
Deposition Author(s): He, F., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Terada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function, structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 2DK5

This is version 1.4 of the entry. See complete history.

Literature

Solution structure of Winged-Helix domain in RNA polymerase III 39KDa polypeptide

He, F., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Terada, T., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 9.87 kDa
Atom Count: 690
Modeled Residue Count: 91
Deposited Residue Count: 91
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA-directed RNA polymerase III 39 kDa polypeptide	A	91	Homo sapiens	Mutation(s): 1 Gene Names: POLR3F, RPC39 EC: 2.7.7.6
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H1D9 (Homo sapiens) Explore Q9H1D9 Go to UniProtKB: Q9H1D9
PHAROS: Q9H1D9 GTEx: ENSG00000132664
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9H1D9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function, structures with the lowest energy

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2006-10-06

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2006-10-06
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2021-11-10
Changes: Data collection, Database references, Derived calculations
Version 1.4: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.