2DIF

One sequence two fold ? : Miss fold of the zf-B-box domain from human tripartite motif protein 39

• PDB DOI: https://doi.org/10.2210/pdb2DIF/pdb

• Classification: PROTEIN BINDING
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2006-03-29 Released: 2006-09-29 
• Deposition Author(s): Tomizawa, T., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function, structures with the lowest energy, structures with the least restraint violations 

Literature

One sequence two fold ? : Miss fold of the zf-B-box domain from human tripartite motif protein 39

Tomizawa, T., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 5.63 kDa 
• Atom Count: 384 
• Modelled Residue Count: 53 
• Deposited Residue Count: 53 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tripartite motif protein 39	A	53	Homo sapiens	Mutation(s): 0  Gene Names: TRIM39 EC: 2.3.2.27
UniProt & NIH Common Fund Data Resources
Find proteins for Q9HCM9 (Homo sapiens) Explore Q9HCM9  Go to UniProtKB:  Q9HCM9
PHAROS:  Q9HCM9 GTEx:  ENSG00000204599

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN	B [auth A], C [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function, structures with the lowest energy, structures with the least restraint violations 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-09-29 
Deposition Author(s): Tomizawa, T., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2006-09-29
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-03-09
  Changes: Data collection, Database references, Derived calculations
• Version 1.4: 2024-05-29
  Changes: Data collection