Download MendeleyCrystal Structure of Human Malate Dehydrogenase Type 2
Ugochukwu, E., Shafqat, N., Rojkova, A., Sundstrom, M., Arrowsmith, C., Weigelt, J., Edwards, A., von Delft, F., Oppermann, U.To be published.
2DFD
Crystal Structure of Human Malate Dehydrogenase Type 2
- DOI: 10.2210/pdb2DFD/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2006-02-28 Released: 2006-03-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.194
- R-Value Work: 0.156
- R-Value Observed: 0.158
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Malate dehydrogenase | A, B, C, D | 342 | Homo sapiens | Mutation(s): 0 Gene Names: MDH2 EC: 1.1.1.37 |  |
Find proteins for P40926 (Homo sapiens) Explore P40926 Go to UniProtKB: P40926 | |||||
NIH Common Fund Data Resources | |||||
PHAROS: P40926 GTEx: ENSG00000146701 | |||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAD Query on NAD | A, B, C, D | NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N |  | Ligand Interaction | |
| HIS Query on HIS | A, B, C | HISTIDINE C6 H10 N3 O2 HNDVDQJCIGZPNO-YFKPBYRVSA-O |  | Ligand Interaction | |
| MLT Query on MLT | A, B, C, D | D-MALATE C4 H6 O5 BJEPYKJPYRNKOW-UWTATZPHSA-N |  | Ligand Interaction | |
| ALA Query on ALA | A | ALANINE C3 H7 N O2 QNAYBMKLOCPYGJ-REOHCLBHSA-N |  | Ligand Interaction | |
| CL Query on CL | A, B, C, D | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.194
- R-Value Work: 0.156
- R-Value Observed: 0.158
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 59.943 | α = 90 |
| b = 152.526 | β = 90 |
| c = 154.827 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MOSFLM | data reduction |
| CCP4 | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Deposited Date: 2006-02-28
- Released Date: 2006-03-28 Deposition Author(s): Ugochukwu, E., Shafqat, N., Rojkova, A., Sundstrom, M., Arrowsmith, C., Weigelt, J., Edwards, A., von Delft, F., Oppermann, U., Structural Genomics Consortium (SGC)
