2D6M
Crystal structure of mouse galectin-9 N-terminal CRD in complex with lactose
- PDB DOI: https://doi.org/10.2210/pdb2D6M/pdb
- Classification: SUGAR BINDING PROTEIN
- Organism(s): Mus musculus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No 
- Deposited: 2005-11-14 Released: 2006-09-26 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.232 
- R-Value Work: 0.183 
- R-Value Observed: 0.185 
wwPDB Validation   3D Report Full Report
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
lectin, galactose binding, soluble 9 | 159 | Mus musculus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for O08573 (Mus musculus) Explore O08573  Go to UniProtKB:  O08573 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O08573 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_900008 Query on PRD_900008 | C, D | alpha-lactose | Oligosaccharide / Nutrient |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.232 
- R-Value Work: 0.183 
- R-Value Observed: 0.185 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 56.643 | α = 90 |
b = 58.472 | β = 90 |
c = 92 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
HKL-2000 | data reduction |
SCALEPACK | data scaling |
MOLREP | phasing |
Entry History 
Deposition Data
- Released Date: 2006-09-26  Deposition Author(s): Nagae, M., Nishi, N., Nakamura, T., Wakatsuki, S., Kato, R.
Revision History (Full details and data files)
- Version 1.0: 2006-09-26
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Non-polymer description, Structure summary - Version 2.1: 2023-10-25
Changes: Data collection, Database references, Refinement description, Structure summary