2CSL | pdb_00002csl

Crystal structure of TTHA0137 from Thermus Thermophilus HB8

• PDB DOI: https://doi.org/10.2210/pdb2CSL/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Thermus thermophilus HB8
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2005-05-22 Released: 2005-11-22 
• Deposition Author(s): Wang, H., Murayama, K., Terada, T., Chen, L., Jin, Z., Chrzas, J., Liu, Z.J., Wang, B.C., Shirouzu, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 
  0.267 (Depositor), 0.267 (DCC) 
• R-Value Work: 
  0.224 (Depositor), 0.223 (DCC) 
• R-Value Observed: 
  0.224 (Depositor) 

Literature

Crystal structure of TTHA0137 from Thermus Thermophilus HB8

Wang, H., Murayama, K., Terada, T., Chen, L., Jin, Z., Chrzas, J., Liu, Z.J., Wang, B.C., Shirouzu, M., Kuramitsu, S., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 79.79 kDa 
• Atom Count: 5,703 
• Modeled Residue Count: 744 
• Deposited Residue Count: 744 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
protein translation initiation inhibitor	A, B, C, D, E, F	124	Thermus thermophilus HB8	Mutation(s): 3
UniProt
Find proteins for Q5SM06 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SM06  Go to UniProtKB:  Q5SM06

Small Molecules

Modified Residues  1 Unique
ID	Chains	Modified Residue	Modification Type	Formula	2D Diagram
MSE	A, B, C, D, E, F	MET	Selenomethionine	C5 H11 N O2 Se

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free:  0.267 (Depositor), 0.267 (DCC) 
• R-Value Work:  0.224 (Depositor), 0.223 (DCC) 
• R-Value Observed: 0.224 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 111.85	α = 90
b = 111.99	β = 90
c = 111.75	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-11-22 
Deposition Author(s): Wang, H., Murayama, K., Terada, T., Chen, L., Jin, Z., Chrzas, J., Liu, Z.J., Wang, B.C., Shirouzu, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2005-11-22
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Source and taxonomy, Version format compliance
• Version 1.3: 2024-11-20
  Changes: Data collection, Database references, Derived calculations, Structure summary