2C0W

Molecular Structure of fd Filamentous Bacteriophage Refined with Respect to X-ray Fibre Diffraction


Experimental Data Snapshot

  • Method: FIBER DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Work: 0.210 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Molecular Structure of Fd (F1, M13) Filamentous Bacteriophage Refined with Respect to X-Ray Fibre Diffraction and Solid-State NMR Data Supports Specific Models of Phage Assembly at the Bacterial Membrane.

Marvin, D.A.Welsh, L.C.Symmons, M.F.Scott, W.R.P.Straus, S.K.

(2006) J.Mol.Biol. 355: 294

  • DOI: 10.1016/j.jmb.2005.10.048
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Filamentous bacteriophage (Inovirus) is a simple and well-characterized model system. The phage particle, or virion, is about 60 angstroms in diameter and several thousand angstrom units long. The virions are assembled at the bacterial membrane as th ...

    Filamentous bacteriophage (Inovirus) is a simple and well-characterized model system. The phage particle, or virion, is about 60 angstroms in diameter and several thousand angstrom units long. The virions are assembled at the bacterial membrane as they extrude out of the host without killing it, an example of specific transport of nucleoprotein assemblages across membranes. The Ff group (fd, f1 and M13) has been especially widely studied. Models of virion assembly have been proposed based on a molecular model of the fd virion derived by X-ray fibre diffraction. A somewhat different model of the fd virion using solid-state NMR data has been proposed, not consistent with these models of assembly nor with the X-ray diffraction data. Here we show that reinterpreted NMR data are also consistent with the model derived from X-ray fibre diffraction studies, and discuss models of virion assembly.


    Related Citations: 
    • Molecular Models and Structural Comparisons of Native and Mutant Class I Filamentous Bacteriophages Ff (Fd, F1, M13), If1 and Ike
      Marvin, D.A.,Hale, R.D.,Nave, C.,Helmer-Citterich, M.
      (1994) J.Mol.Biol. 235: 260
    • Matching Electrostatic Charge between DNA and Coat Protein in Filamentous Bacteriophage. Fibre Diffraction of Charge-Deletion Mutants.
      Symmons, M.F.,Welsh, L.C.,Nave, C.,Marvin, D.A.,Perham, R.N.
      (1995) J.Mol.Biol. 245: 86
    • Model-Building Studies of Inovirus: Genetic Variations on a Geometric Theme
      Marvin, D.A.
      (1990) Int.J.Biol.Macromol. 12: 125


    Organizational Affiliation

    Department of Biochemistry, University of Cambridge, Cambridge CB2 1GA, UK. d.a.marvin@bioc.cam.ac.uk




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
COAT PROTEIN B
A
50Enterobacteria phage fdMutation(s): 1 
Gene Names: VIII
Find proteins for P69539 (Enterobacteria phage fd)
Go to UniProtKB:  P69539
Experimental Data & Validation

Experimental Data

  • Method: FIBER DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Work: 0.210 
Software Package:
Software NamePurpose
CCP13data reduction
FX-PLORphasing
X-PLORrefinement
CCP13-FDSCALEdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2005-12-14
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Source and taxonomy, Version format compliance
  • Version 1.2: 2013-05-01
    Type: Data collection, Source and taxonomy, Structure summary