2BZF

Structural basis for DNA bridging by barrier-to-autointegration factor (BAF)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.87 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.244 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structural Basis for DNA Bridging by Barrier-to-Autointegration Factor.

Bradley, C.M.Ronning, D.R.Ghirlando, R.Craigie, R.Dyda, F.

(2005) Nat.Struct.Mol.Biol. 12: 935

  • DOI: 10.1038/nsmb989

  • PubMed Abstract: 
  • The ability of barrier-to-autointegration factor (BAF) to bind and bridge DNA in a sequence-independent manner is crucial for its role in retroviral integration and a variety of cellular processes. To better understand this behavior, we solved the cr ...

    The ability of barrier-to-autointegration factor (BAF) to bind and bridge DNA in a sequence-independent manner is crucial for its role in retroviral integration and a variety of cellular processes. To better understand this behavior, we solved the crystal structure of BAF bound to DNA. The structure reveals that BAF bridges DNA using two pairs of helix-hairpin-helix motifs located on opposite surfaces of the BAF dimer without changing its conformation.


    Organizational Affiliation

    Laboratory of Molecular Biology, National Institute of Diabetes & Digestive & Kidney Diseases, US National Institutes of Health (NIH), 5 Center Drive, Bethesda, Maryland 20892, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
BARRIER-TO-AUTOINTEGRATION FACTOR
A
89Homo sapiensMutation(s): 0 
Gene Names: BANF1 (BAF, BCRG1)
Find proteins for O75531 (Homo sapiens)
Go to Gene View: BANF1
Go to UniProtKB:  O75531
Entity ID: 2
MoleculeChainsLengthOrganism
5'-D(*GP*TP*GP*GP*AP*GP*GP)-3'B7N/A
Entity ID: 3
MoleculeChainsLengthOrganism
5'-D(*CP*CP*TP*CP*CP*AP*CP)-3'C7N/A
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.87 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.244 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 45.830α = 90.00
b = 45.830β = 90.00
c = 241.920γ = 90.00
Software Package:
Software NamePurpose
SCALEPACKdata scaling
CNSphasing
CNSrefinement
DENZOdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2005-09-15
    Type: Initial release
  • Version 1.1: 2011-05-08
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance