Biological Assembly 1  

 3D View: Structure | Electron Density

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Global Symmetry: Cyclic - C2  (3D View)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PQS (software)

Macromolecule Content

• Total Structure Weight: 32658.13 
• Atom Count: 2109 
• Residue Count: 284 
• Unique protein chains: 1

2BPD

STRUCTURE OF MURINE DECTIN-1

• DOI: 10.2210/pdb2BPD/pdb

• Classification: RECEPTOR
• Organism(s): Mus musculus
• Expression System: Escherichia coli BL21(DE3)


• Deposited: 2005-04-19 Released: 2006-08-30 
• Deposition Author(s): Brown, J., O'Callaghan, C.A., Marshall, A.S.J., Gilbert, R.J.C., Siebold, C., Gordon, S., Brown, G.D., Jones, E.Y.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.5 Å
• R-Value Free: 0.270 
• R-Value Work: 0.214 

Literature

Structure of the Fungal Beta-Glucan-Binding Immune Receptor Dectin-1: Implications for Function.

Brown, J., O'Callaghan, C.A., Marshall, A.S.J., Gilbert, R.J.C., Siebold, C., Gordon, S., Brown, G.D., Jones, E.Y.

(2007) Protein Sci. 16: 1042

• PubMed: 17473009 
• DOI: 10.1110/ps.072791207
• Primary Citation of Related Structures:  
  2BPH, 2CL8, 2BPE


• PubMed Abstract: 
  

The murine molecule dectin-1 (known as the beta-glucan receptor in humans) is an immune cell surface receptor implicated in the immunological defense against fungal pathogens. Sequence analysis has indicated that the dectin-1 extracellular domain is a C-type lectin-like domain, and functional studies have established that it binds fungal beta-glucans. We report several dectin-1 crystal structures, including a high-resolution structure and a 2.8 angstroms resolution structure in which a short soaked natural beta-glucan is trapped in the crystal lattice. In vitro characterization of dectin-1 in the presence of its natural ligand indicates higher-order complex formation between dectin-1 and beta-glucans. These combined structural and biophysical data considerably extend the current knowledge of dectin-1 structure and function, and suggest potential mechanisms of defense against fungal pathogens.

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Organizational Affiliation: 

CR-UK Receptor Structure Research Group, Division of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, OX3 7BN, United Kingdom.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
DECTIN-1	A, B	142	Mus musculus	Mutation(s): 0  Gene Names: Clec7a (Bgr, Clecsf12, Dectin1)
Find proteins for Q6QLQ4 (Mus musculus) Go to UniProtKB:  Q6QLQ4

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.5 Å
• R-Value Free: 0.270 
• R-Value Work: 0.214 
• Space Group: P 3₂

Unit Cell:

Length (Å)	Angle (°)
a = 57.104	α = 90.00
b = 57.104	β = 90.00
c = 73.422	γ = 120.00

Software Package:

Software Name	Purpose
AMoRE	phasing
SCALEPACK	data scaling
CaspR	phasing
DENZO	data reduction
REFMAC	refinement

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2005-04-19 
• Released Date: 2006-08-30 
• Deposition Author(s): Brown, J., O'Callaghan, C.A., Marshall, A.S.J., Gilbert, R.J.C., Siebold, C., Gordon, S., Brown, G.D., Jones, E.Y.

Revision History 

• Version 1.0: 2006-08-30
  Type: Initial release
• Version 1.1: 2011-07-13
  Type: Advisory, Version format compliance
• Version 1.2: 2017-07-12
  Type: Refinement description
• Version 1.3: 2019-04-03
  Type: Data collection, Source and taxonomy