2BGY | pdb_00002bgy

Fit of the x-ray structure of the baterial flagellar hook fragment flge31 into an EM map from the hook of Caulobacter crescentus.


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.00 Å
  • Aggregation State: 2D ARRAY 
  • Reconstruction Method: CRYSTALLOGRAPHY 

Starting Model: experimental
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This is version 1.4 of the entry. See complete history

Literature

A Partial Atomic Structure for the Flagellar Hook of Salmonella Typhimurium.

Shaikh, T.R.Thomas, D.R.Chen, J.Z.Samatey, F.A.Matsunami, H.Imada, K.Namba, K.Derosier, D.J.

(2005) Proc Natl Acad Sci U S A 102: 1023

  • DOI: https://doi.org/10.1073/pnas.0409020102
  • Primary Citation Related Structures: 
    2BGY, 2BGZ

  • PubMed Abstract: 

    The axial proteins of the bacterial flagellum function as a drive shaft, universal joint, and propeller driven by the flagellar rotary motor; they also form the putative protein export channel. The N- and C-terminal sequences of the eight axial proteins were predicted to form interlocking alpha-domains generating an axial tube. We report on an approximately 1-nm resolution map of the hook from Salmonella typhimurium, which reveals such a tube made from interdigitated, 1-nm rod-like densities similar to those seen in maps of the filament. Atomic models for the two outer domains of the hook subunit were docked into the corresponding outermost features of the map. The N and C termini of the hook subunit fragment are positioned next to each other and face toward the axis of the hook. The placement of these termini would permit the residues missing in the fragment to form the rod-like features that form the core domain of the hook. We also fit the hook atomic model to an approximately 2-nm resolution map of the hook from Caulobacter crescentus. The hook protein sequence from C. crescentus is largely homologous to that of S. typhimurium except for a large insertion (20 kDa). According to difference maps and our fitting, this insertion is found on the outer surface of the hook, consistent with our modeling of the hook.


  • Organizational Affiliation
    • Dynamic NanoMachine Project, International Cooperative Research Project, Japan Science and Technology Agency, 1-3 Yamadaoka, Suita, Osaka 565-0871, Japan.

Macromolecule Content 

  • Total Structure Weight: 31.34 kDa 
  • Atom Count: 2,156 
  • Modeled Residue Count: 293 
  • Deposited Residue Count: 299 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
FLAGELLAR HOOK PROTEIN FLGE299Salmonella enterica subsp. enterica serovar TyphimuriumMutation(s): 0 
UniProt
Find proteins for P0A1J1 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
Explore P0A1J1 
Go to UniProtKB:  P0A1J1
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0A1J1
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.00 Å
  • Aggregation State: 2D ARRAY 
  • Reconstruction Method: CRYSTALLOGRAPHY 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONBrandeis Helical Package

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2005-01-27
    Type: Initial release
  • Version 1.1: 2014-02-05
    Changes: Source and taxonomy, Version format compliance
  • Version 1.2: 2017-08-30
    Changes: Data collection
  • Version 1.3: 2020-11-18
    Changes: Structure summary
  • Version 1.4: 2024-05-08
    Changes: Data collection, Database references, Refinement description