2BBW

Crystal structure of human adenylate kinase 4 (AK4) in complex with diguanosine pentaphosphate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.180 
  • R-Value Observed: 0.183 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal structure of human adenylate kinase 4 (AK4) in complex with diguanosine pentaphosphate

Filippakopoulos, P.Turnbull, A.P.Fedorov, O.Weigelt, J.Bunkoczi, G.Ugochukwu, E.Debreczeni, J.Niesen, F.von Delft, F.Edwards, A.Arrowsmith, C.Sundstrom, M.Knapp, S.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
adenylate kinase 4, AK4A, B246Homo sapiensMutation(s): 0 
Gene Names: AK4AK3AK3L1
EC: 2.7.4.3 (PDB Primary Data), 2.7.4.10 (UniProt), 2.7.4.6 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for P27144 (Homo sapiens)
Explore P27144 
Go to UniProtKB:  P27144
PHAROS:  P27144
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GP5
Query on GP5

Download Ideal Coordinates CCD File 
C [auth A], D [auth B]DIGUANOSINE-PENTAPHOSPHATE
C20 H29 N10 O24 P5
RELSGTOCAPVUGP-DTFXMBEISA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.180 
  • R-Value Observed: 0.183 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 42.836α = 90
b = 66.375β = 91.5
c = 77.38γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2005-12-06
    Type: Initial release
  • Version 1.1: 2008-05-01
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Advisory, Version format compliance