2BBW

Crystal structure of human adenylate kinase 4 (AK4) in complex with diguanosine pentaphosphate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.180 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of human adenylate kinase 4 (AK4) in complex with diguanosine pentaphosphate

Filippakopoulos, P.Turnbull, A.P.Fedorov, O.Weigelt, J.Bunkoczi, G.Ugochukwu, E.Debreczeni, J.Niesen, F.von Delft, F.Edwards, A.Arrowsmith, C.Sundstrom, M.Knapp, S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
adenylate kinase 4, AK4
A, B
246Homo sapiensMutation(s): 0 
Gene Names: AK4 (AK3, AK3L1)
EC: 2.7.4.10, 2.7.4.6
Find proteins for P27144 (Homo sapiens)
Go to Gene View: AK4
Go to UniProtKB:  P27144
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GP5
Query on GP5

Download SDF File 
Download CCD File 
A, B
DIGUANOSINE-PENTAPHOSPHATE
C20 H29 N10 O24 P5
RELSGTOCAPVUGP-DTFXMBEISA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.180 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 42.836α = 90.00
b = 66.375β = 91.50
c = 77.380γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
REFMACrefinement
PHASERphasing
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2005-12-06
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Advisory, Version format compliance