2BAI | pdb_00002bai

The Zinc finger domain of Mengovirus Leader polypeptide

• PDB DOI: https://doi.org/10.2210/pdb2BAI/pdb
• BMRB: 6863

• Classification: VIRAL PROTEIN
• Organism(s): Mengo virus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2005-10-14 Released: 2006-01-24 
• Deposition Author(s): Cornilescu, C.C., Porter, F.W., Qin, Z., Lee, M.S., Palmenberg, A.C., Markley, J.L., Center for Eukaryotic Structural Genomics (CESG)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

NMR structure of the mengovirus Leader protein zinc-finger domain.

Cornilescu, C.C., Porter, F.W., Zhao, K.Q., Palmenberg, A.C., Markley, J.L.

(2008) FEBS Lett 582: 896-900

• PubMed: 18291103 
• DOI: https://doi.org/10.1016/j.febslet.2008.02.023
• Primary Citation Related Structures: 
  2BAI


• PubMed Abstract: 
  

  The Leader protein is a defining feature of picornaviruses from the Cardiovirus genus. This protein was recently shown to inhibit cellular nucleocytoplasmic transport through an activity mapped to its zinc-binding region. Here we report the three-dimensional solution structure determined by nuclear magnetic resonance (NMR) spectroscopy of this domain (residues 5-28) from mengovirus. The domain forms a CHCC zinc-finger with a fold comprising a beta-hairpin followed by a short alpha-helix that can adopt two different conformations. This structure is divergent from those of other eukaryotic zinc-fingers and instead resembles motifs found in a group of DNA-binding proteins from Archaea.

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Organizational Affiliation: 
• Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706-1544, USA. [e-mail] <[e-mail]>

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 3.79 kDa 
• Atom Count: 256 
• Modeled Residue Count: 32 
• Deposited Residue Count: 32 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Genome polyprotein	A	32	Mengo virus	Mutation(s): 0
UniProt
Find proteins for P32540 (Mengo encephalomyocarditis virus (strain 37A)) Explore P32540  Go to UniProtKB:  P32540

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN	B [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-01-24 
Deposition Author(s): Cornilescu, C.C., Porter, F.W., Qin, Z., Lee, M.S., Palmenberg, A.C., Markley, J.L., Center for Eukaryotic Structural Genomics (CESG)

Revision History  

• Version 1.0: 2006-01-24
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-03-09
  Changes: Database references, Derived calculations
• Version 1.4: 2024-05-22
  Changes: Data collection