2AMT

Structure of 2C-Methyl-D-Erythritol 2,4-Clycodiphosphate Synthase complexed with a CDP derived fluorescent inhibitor

PDB DOI: 10.2210/pdb2AMT/pdb

Classification: LYASE
Organism(s): Escherichia coli
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2005-08-10 Released: 2006-02-28
Deposition Author(s): Ramsden, N.L., Hunter, W.N.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.280
R-Value Work: 0.243
R-Value Observed: 0.245

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.2 of the entry. See complete history.

Literature

Fluorescent Inhibitors for IspF, an Enzyme in the Non-Mevalonate Pathway for Isoprenoid Biosynthesis and a Potential Target for Antimalarial Therapy.

Crane, C.M., Kaiser, J., Ramsden, N.L., Lauw, S., Rohdich, F., Eisenreich, W., Hunter, W.N., Bacher, A., Diederich, F.

(2006) Angew Chem Int Ed Engl 45: 1069-1074

PubMed: 16392111 Search on PubMed
DOI: 10.1002/anie.200503003
Primary Citation of Related Structures:
2AMT, 2GZL

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	A, B, C, D, E, F A, B, C, D, E, F	159	Escherichia coli	Mutation(s): 0 Gene Names: ispF, mecS EC: 4.6.1.12
UniProt
Find proteins for P62617 (Escherichia coli (strain K12)) Explore P62617 Go to UniProtKB: P62617
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P62617
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
1AA Query on 1AA Download Ideal Coordinates CCD File SDF format, chain H [auth A] SDF format, chain M [auth C] SDF format, chain L [auth C] SDF format, chain O [auth D] SDF format, chain R [auth E] SDF format, chain S [auth E] MOL2 format, chain H [auth A] MOL2 format, chain M [auth C] MOL2 format, chain L [auth C] MOL2 format, chain O [auth D] MOL2 format, chain R [auth E] MOL2 format, chain S [auth E]	H [auth A], L [auth C], M [auth C], O [auth D], R [auth E], H [auth A], L [auth C], M [auth C], O [auth D], R [auth E], S [auth E]	5'-O-[({[(2-{[(2-AMINOPHENYL)CARBONYL]OXY}ETHYL)OXY]PHOSPHINATO}OXY)PHOSPHINATO]CYTIDINE C₁₈ H₂₄ N₄ O₁₃ P₂ PGXVRIOOHRVKLC-DTZQCDIJSA-N		Ligand Interaction
GPP Query on GPP Download Ideal Coordinates CCD File SDF format, chain I [auth A] SDF format, chain P [auth D] MOL2 format, chain I [auth A] MOL2 format, chain P [auth D]	I [auth A], P [auth D]	GERANYL DIPHOSPHATE C₁₀ H₂₀ O₇ P₂ GVVPGTZRZFNKDS-JXMROGBWSA-N		Ligand Interaction
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain N [auth D] SDF format, chain G [auth A] SDF format, chain J [auth B] SDF format, chain K [auth C] SDF format, chain Q [auth E] SDF format, chain T [auth F] MOL2 format, chain N [auth D] MOL2 format, chain G [auth A] MOL2 format, chain J [auth B] MOL2 format, chain K [auth C] MOL2 format, chain Q [auth E] MOL2 format, chain T [auth F]	G [auth A], J [auth B], K [auth C], N [auth D], Q [auth E], G [auth A], J [auth B], K [auth C], N [auth D], Q [auth E], T [auth F]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Ligand Interaction