2AAS

HIGH-RESOLUTION THREE-DIMENSIONAL STRUCTURE OF RIBONUCLEASE A IN SOLUTION BY NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Submitted: 32 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

High-resolution three-dimensional structure of ribonuclease A in solution by nuclear magnetic resonance spectroscopy.

Santoro, J.Gonzalez, C.Bruix, M.Neira, J.L.Nieto, J.L.Herranz, J.Rico, M.

(1993) J.Mol.Biol. 229: 722-734

  • DOI: 10.1006/jmbi.1993.1075

  • PubMed Abstract: 
  • High-resolution three-dimensional structures of bovine pancreatic ribonuclease A in aqueous solution have been determined by nuclear magnetic resonance (NMR) spectroscopy combined with restrained molecular dynamics calculations. The structures are ba ...

    High-resolution three-dimensional structures of bovine pancreatic ribonuclease A in aqueous solution have been determined by nuclear magnetic resonance (NMR) spectroscopy combined with restrained molecular dynamics calculations. The structures are based on: (1) 464 interproton distance constraints with accurate upper and lower limits, determined from build-up rates of nuclear Overhauser effects (NOE) by using the complete relaxation matrix; (2) 999 more approximate upper limits for interproton distances; and (3) 42 dihedral angle constraints (37 for phi and 5 for chi 1). A total of 16 structures were calculated, which show a root-mean-square (r.m.s.) deviation of 0.66 A for the backbone atoms and 1.68 A for all heavy-atoms. The converged structures are highly similar to those found in the crystal state. r.m.s. deviation of backbone atom positions in the crystal as compared to those in the average solution structure is 0.92 A. Observed differences are concentrated in loop regions and in the neighborhood of His119 and His48 side-chains. Dynamic aspects, such as H/D amide proton exchange and side-chain mobility have been examined.


    Related Citations: 
    • 3D Structure of Bovine Pancreatic Ribonuclease A in Aqueous Solution
      Rico, M.,Santoro, J.,Gonzalez, C.,Bruix, M.,Neira, J.L.,Nieto, J.L.,Herranz, J.
      (1991) J.Biomol.NMR 1: 283
    • Refined Structure of Bovine Pancreatic Ribonuclease A by 1H NMR Methods. Side Chain Dynamics
      Rico, M.,Santoro, J.,Gonzalez, C.,Bruix, M.,Neira, J.L.,Nieto, J.L.
      (1993) Appl.Magn.Reson. 4: 385
    • Sequential 1H-NMR Assignment and Solution Structure of Bovine Pancreatic Ribonuclease A
      Rico, M.,Bruix, M.,Santoro, J.,Gonzalez, C.,Neira, J.L.,Nieto, J.L.,Herranz, J.
      (1989) Eur.J.Biochem. 183: 623
    • Solution Structure of Bovine Pancreatic Ribonuclease A and Ribonuclease-Pyrimidine Nucleotide Complexes as Determined by 1H NMR
      Rico, M.,Santoro, J.,Gonzalez, C.,Bruix, M.,Neira, J.L.
      (1991) Structure, Mechanism and Function of Ribonucleases --: 9


    Organizational Affiliation

    Instituto de Estructura de la Materia, CSIC, Madrid, Spain.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
RIBONUCLEASE A
A
124Bos taurusGene Names: RNASE1 (RNS1)
EC: 3.1.27.5
Find proteins for P61823 (Bos taurus)
Go to Gene View: RNASE1
Go to UniProtKB:  P61823
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Submitted: 32 
  • Olderado: 2AAS Olderado

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1994-01-31
    Type: Initial release
  • Version 1.1: 2008-03-24
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2017-11-29
    Type: Derived calculations, Other