2A4F

Synthesis and Activity of N-Axyl Azacyclic Urea HIV-1 Protease Inhibitors with High Potency Against Multiple Drug Resistant Viral Strains.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.336 
  • R-Value Work: 0.298 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Synthesis and activity of N-acyl azacyclic urea HIV-1 protease inhibitors with high potency against multiple drug resistant viral strains

Zhao, C.Sham, H.L.Sun, M.Stoll, V.S.Stewart, K.D.Lin, S.Mo, H.Vasavanonda, S.Saldivar, A.Park, C.McDonald, E.J.Marsh, K.C.Klein, L.L.Kempf, D.J.Norbeck, D.W.

(2005) Bioorg.Med.Chem.Lett. 15: 5499-5503

  • DOI: 10.1016/j.bmcl.2005.08.093

  • PubMed Abstract: 
  • As part of our efforts to identify potent HIV-1 protease inhibitors that are active against resistant viral strains, structural modification of the azacyclic urea (I) was undertaken by incorporating acyl groups as P(1)' ligands. The extensive SAR stu ...

    As part of our efforts to identify potent HIV-1 protease inhibitors that are active against resistant viral strains, structural modification of the azacyclic urea (I) was undertaken by incorporating acyl groups as P(1)' ligands. The extensive SAR study has yielded a series of N-acyl azacyclic ureas (II), which are highly potent against both wild-type and multiple PI-resistant viral strains.


    Organizational Affiliation

    GPRD, Abbott Laboratories, Abbott Park, IL 60064-6123, USA. chen.zhao@abbott.com




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Pol polyprotein
A, B
99Human immunodeficiency virus 1Mutation(s): 0 
Gene Names: ORF
Find proteins for Q9Q2G8 (Human immunodeficiency virus 1)
Go to UniProtKB:  Q9Q2G8
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
AAU
Query on AAU

Download SDF File 
Download CCD File 
B
(5R,6R)-5-BENZYL-6-HYDROXY-2,4-BIS(4-HYDROXY-3-METHOXYBENZYL)-1-[3-(4-HYDROXYPHENYL)PROPANOYL]-1,2,4-TRIAZEPAN-3-ONE
C36 H39 N3 O8
LSKQYQOZDSRURR-QLWXXVCSSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.336 
  • R-Value Work: 0.298 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 58.008α = 90.00
b = 85.742β = 90.00
c = 46.646γ = 90.00
Software Package:
Software NamePurpose
SCALEPACKdata scaling
HKL-2000data reduction
CNXphasing
CNXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2005-09-20
    Type: Initial release
  • Version 1.1: 2008-04-30
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance