2A0M

Arginase superfamily protein from Trypanosoma cruzi


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.603 Å
  • R-Value Free: 0.195 
  • R-Value Work: 0.168 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

Structural genomics of pathogenic protozoa: an overview.

Fan, E.Baker, D.Fields, S.Gelb, M.H.Buckner, F.S.Van Voorhis, W.C.Phizicky, E.Dumont, M.Mehlin, C.Grayhack, E.Sullivan, M.Verlinde, C.Detitta, G.Meldrum, D.R.Merritt, E.A.Earnest, T.Soltis, M.Zucker, F.Myler, P.J.Schoenfeld, L.Kim, D.Worthey, L.Lacount, D.Vignali, M.Li, J.Mondal, S.Massey, A.Carroll, B.Gulde, S.Luft, J.Desoto, L.Holl, M.Caruthers, J.Bosch, J.Robien, M.Arakaki, T.Holmes, M.Le Trong, I.Hol, W.G.

(2008) Methods Mol.Biol. 426: 497-513

  • DOI: 10.1007/978-1-60327-058-8_33

  • PubMed Abstract: 
  • The Structural Genomics of Pathogenic Protozoa (SGPP) Consortium aimed to determine crystal structures of proteins from trypanosomatid and malaria parasites in a high throughput manner. The pipeline of target selection, protein production, crystalliz ...

    The Structural Genomics of Pathogenic Protozoa (SGPP) Consortium aimed to determine crystal structures of proteins from trypanosomatid and malaria parasites in a high throughput manner. The pipeline of target selection, protein production, crystallization, and structure determination, is sketched. Special emphasis is given to a number of technology developments including domain prediction, the use of "co-crystallants," and capillary crystallization. "Fragment cocktail crystallography" for medical structural genomics is also described.


    Organizational Affiliation

    Department of Biochemistry, University of Washington, Seattle, WA, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ARGINASE SUPERFAMILY PROTEIN
A
316Trypanosoma cruzi (strain CL Brener)Mutation(s): 0 
Find proteins for Q4DSA0 (Trypanosoma cruzi (strain CL Brener))
Go to UniProtKB:  Q4DSA0
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.603 Å
  • R-Value Free: 0.195 
  • R-Value Work: 0.168 
  • Space Group: H 3
Unit Cell:
Length (Å)Angle (°)
a = 128.875α = 90.00
b = 128.875β = 90.00
c = 42.671γ = 120.00
Software Package:
Software NamePurpose
MOLREPphasing
REFMACrefinement
DENZOdata reduction
PDB_EXTRACTdata extraction
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2005-07-05
    Type: Initial release
  • Version 1.1: 2008-04-30
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Derived calculations, Version format compliance
  • Version 1.3: 2013-10-16
    Type: Database references
  • Version 1.4: 2017-10-11
    Type: Advisory, Refinement description