1Y80

Structure of a corrinoid (factor IIIm)-binding protein from Moorella thermoacetica


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.210 
  • R-Value Work: 0.174 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

Structure of a corrinoid (factor IIIm)-binding protein from Moorella thermoacetica

Liu, Z.-J.Fu, Z.-Q.Tempel, W.Das, A.Habel, J.Zhou, W.Chang, J.Chen, L.Lee, D.Nguyen, D.Chang, S.-H.Ljungdahl, L.Rose, J.P.Wang, B.-C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Predicted cobalamin binding protein
A
210Moorella thermoacetica (strain ATCC 39073 / JCM 9320)Mutation(s): 0 
EC: 2.1.1.13
Find proteins for Q2RJ67 (Moorella thermoacetica (strain ATCC 39073 / JCM 9320))
Go to UniProtKB:  Q2RJ67
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
UNX
Query on UNX

Download SDF File 
Download CCD File 
A
UNKNOWN ATOM OR ION
X
*
 Ligand Interaction
B1M
Query on B1M

Download SDF File 
Download CCD File 
A
CO-5-METHOXYBENZIMIDAZOLYLCOBAMIDE
FACTOR IIIM
C61 H86 Co N13 O15 P
CJVUSTVYODMZMZ-VLQLATOYDR
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.210 
  • R-Value Work: 0.174 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 55.689α = 90.00
b = 62.738β = 90.00
c = 34.543γ = 90.00
Software Package:
Software NamePurpose
SHELXDphasing
SOLVEphasing
DENZOdata reduction
SCALEPACKdata scaling
RESOLVEphasing
REFMACrefinement
MAR345data collection
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2005-01-25
    Type: Initial release
  • Version 1.1: 2008-04-30
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2012-07-25
    Type: Other
  • Version 1.4: 2017-10-11
    Type: Refinement description